CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID PtpAffx.85797.1.S1_s_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At1g01540: protein kinase family protein (HF=3e-1)

Module size 6 genes

NF 0.14

%ile 26.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 99.2 0.93 PtpAffx.85797.1.S1_s_at BU812872 hypothetical protein - 3e-1 At1g01540 protein kinase family protein O.I. H.G. S.X.
0.40 67.0 0.94 Ptp.2927.2.S1_at DN499742 tubulin gamma complex-associated protein /// tubulin gamma complex-associated protein - 5e-47 At5g06680 SPC98 (SPINDLE POLE BODY COMPONENT 98) O.I. H.G. S.X.
0.15 25.3 0.95 Ptp.777.1.A1_at CV236864 - - 7e+0 At4g05530 IBR1 (INDOLE-3-BUTYRIC ACID RESPONSE 1) O.I. H.G. S.X.
0.13 21.6 0.94 PtpAffx.109942.1.S1_s_at CN550009 hypothetical protein - 1e-4 At1g01660 U-box domain-containing protein O.I. H.G. S.X.
0.13 21.6 0.95 Ptp.6370.3.S1_a_at CK091400 hypothetical protein - 6e+0 At3g23635 RTFL13 (ROTUNDIFOLIA LIKE 13) O.I. H.G. S.X.
0.03 5.2 0.94 PtpAffx.212583.1.S1_at pmrna24652 hypothetical protein - 1e-10 At5g24260 prolyl oligopeptidase family protein O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.50	78.6	0.96	Ptp.5438.1.S1_at	CK106216	hypothetical protein	-	1e-14	At1g80600	WIN1 (HOPW1-1-INTERACTING 1)	O.I.	H.G.	S.X.
0.44	71.9	0.91	PtpAffx.54313.1.S1_at	AI166744	hypothetical protein	-	2e-9	At5g44390	FAD-binding domain-containing protein	O.I.	H.G.	S.X.
0.44	71.9	0.93	PtpAffx.207124.1.S1_at	pmrna14129	hypothetical protein	-	5e-42	At2g22250	aminotransferase class I and II family protein	O.I.	H.G.	S.X.
0.36	61.6	0.89	PtpAffx.158716.1.S1_at	AJ768557	hypothetical protein	-	2e-2	At5g22930	unknown protein	O.I.	H.G.	S.X.
0.36	61.6	0.93	Ptp.3569.1.S1_at	DN493050	hypothetical protein	-	3e-5	At2g46620	AAA-type ATPase family protein	O.I.	H.G.	S.X.
0.33	57.5	0.89	PtpAffx.221821.1.S1_at	pmrna38893	hypothetical protein	-	2e+0	At5g51870	AGL71 (AGAMOUS-LIKE 71)	O.I.	H.G.	S.X.
0.32	55.2	0.89	PtpAffx.75184.1.A1_at	CV282822	hypothetical protein	-	7e-9	At2g03210	FUT2 (FUCOSYLTRANSFERASE 2)	O.I.	H.G.	S.X.
0.31	53.7	0.94	Ptp.3945.1.S1_at	CF235619	hypothetical protein	-	1e-4	At2g16760	-	O.I.	H.G.	S.X.
0.29	50.5	0.92	Ptp.5536.1.S1_at	CV254150	hypothetical protein	-	2e+0	At2g29450	ATGSTU5 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 5)	O.I.	H.G.	S.X.
0.29	50.5	0.93	PtpAffx.211456.1.S1_at	pmrna22448	hypothetical protein	-	5e-8	At3g60680	unknown protein	O.I.	H.G.	S.X.
0.25	43.6	0.93	PtpAffx.218944.1.S1_s_at	pmrna34708	hypothetical protein	-	3e-8	At1g60500	dynamin family protein	O.I.	H.G.	S.X.
0.25	43.6	0.95	PtpAffx.220765.1.S1_s_at	pmrna37189	hypothetical protein /// cyclic nucleotide-gated channel	-	4e-12	At4g30360	ATCNGC17	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.9 95.1 GSM328105 Populus x canescens leaf hypoxia_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.7 91.8 GSM328062 Populus x canescens leaf control_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.4 90.4 GSM328566 Populus x canescens root hypoxia_rep_08 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.3 89.8 GSM328562 Populus x canescens root hypoxia_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.3 89.8 GSM328558 Populus x canescens root control_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.2 89.3 GSM328285 Populus x canescens root control_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.2 89.3 GSM328557 Populus x canescens root control_rep_08 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.2 89.3 GSM328066 Populus x canescens leaf control_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.2 89.3 GSM328565 Populus x canescens root hypoxia_rep_07 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.1 88.6 GSM328284 Populus x canescens root control_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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