Co-expression analysis

Gene ID	PtpAffx.85797.1.S1_s_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At1g01540: protein kinase family protein (HF=3e-1)
Module size	6 genes
NF	0.14
%ile	26.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.2	0.93	PtpAffx.85797.1.S1_s_at	BU812872	hypothetical protein	-	3e-1	At1g01540	protein kinase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.94	Ptp.2927.2.S1_at	DN499742	tubulin gamma complex-associated protein /// tubulin gamma complex-associated protein	-	5e-47	At5g06680	SPC98 (SPINDLE POLE BODY COMPONENT 98)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.15	25.3	0.95	Ptp.777.1.A1_at	CV236864	-	-	7e+0	At4g05530	IBR1 (INDOLE-3-BUTYRIC ACID RESPONSE 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.13	21.6	0.94	PtpAffx.109942.1.S1_s_at	CN550009	hypothetical protein	-	1e-4	At1g01660	U-box domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.13	21.6	0.95	Ptp.6370.3.S1_a_at	CK091400	hypothetical protein	-	6e+0	At3g23635	RTFL13 (ROTUNDIFOLIA LIKE 13)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.03	5.2	0.94	PtpAffx.212583.1.S1_at	pmrna24652	hypothetical protein	-	1e-10	At5g24260	prolyl oligopeptidase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.9	95.1	GSM328105	Populus x canescens leaf hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.7	91.8	GSM328062	Populus x canescens leaf control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.4	90.4	GSM328566	Populus x canescens root hypoxia_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.3	89.8	GSM328562	Populus x canescens root hypoxia_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.3	89.8	GSM328558	Populus x canescens root control_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.2	89.3	GSM328285	Populus x canescens root control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.2	89.3	GSM328557	Populus x canescens root control_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.2	89.3	GSM328066	Populus x canescens leaf control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.2	89.3	GSM328565	Populus x canescens root hypoxia_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.1	88.6	GSM328284	Populus x canescens root control_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

A co-expression module including the maize gene, Zm.1387.1.S1_at, orthologous to the query gene, PtpAffx.85797.1.S1_s_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.55	71.6	Zm.1387.1.S1_at	At1g01540	pseudouridylate synthase	-	1e+0	At3g17140	invertase inhibitor-related	O.I.	H.G.	S.X.	Please select
0.33	36.0	Zm.2010.1.S1_at	At1g01540	-	-	4e+0	At1g26355	SP1L1 (SPIRAL1-LIKE1)	O.I.	H.G.	S.X.	Please select
0.23	18.6	Zm.879.1.A1_at	At1g01540	hypothetical protein LOC100276616	-	7e+0	At5g35300	unknown protein	O.I.	H.G.	S.X.	Please select
0.12	5.9	Zm.10800.2.S1_at	At1g01540	-	-	3e-1	At3g62130	epimerase-related	O.I.	H.G.	S.X.	Please select
0.06	2.3	Zm.2846.1.A1_at	At1g01540	-	-	1e+1	At3g22570	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	O.I.	H.G.	S.X.	Please select
0.05	1.9	Zm.15280.2.A1_at	At1g01540	-	-	9e+0	At5g19650	OFP8 (ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 8)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Back to the CoP portal site

Back to the KAGIANA project homepage