Co-expression analysis

Gene ID	PtpAffx.85797.1.S1_s_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At1g01540: protein kinase family protein (HF=3e-1)
Module size	6 genes
NF	0.14
%ile	26.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.2	0.93	PtpAffx.85797.1.S1_s_at	BU812872	hypothetical protein	-	3e-1	At1g01540	protein kinase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.94	Ptp.2927.2.S1_at	DN499742	tubulin gamma complex-associated protein /// tubulin gamma complex-associated protein	-	5e-47	At5g06680	SPC98 (SPINDLE POLE BODY COMPONENT 98)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.15	25.3	0.95	Ptp.777.1.A1_at	CV236864	-	-	7e+0	At4g05530	IBR1 (INDOLE-3-BUTYRIC ACID RESPONSE 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.13	21.6	0.94	PtpAffx.109942.1.S1_s_at	CN550009	hypothetical protein	-	1e-4	At1g01660	U-box domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.13	21.6	0.95	Ptp.6370.3.S1_a_at	CK091400	hypothetical protein	-	6e+0	At3g23635	RTFL13 (ROTUNDIFOLIA LIKE 13)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.03	5.2	0.94	PtpAffx.212583.1.S1_at	pmrna24652	hypothetical protein	-	1e-10	At5g24260	prolyl oligopeptidase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.9	95.1	GSM328105	Populus x canescens leaf hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.7	91.8	GSM328062	Populus x canescens leaf control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.4	90.4	GSM328566	Populus x canescens root hypoxia_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.3	89.8	GSM328562	Populus x canescens root hypoxia_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.3	89.8	GSM328558	Populus x canescens root control_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.2	89.3	GSM328285	Populus x canescens root control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.2	89.3	GSM328557	Populus x canescens root control_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.2	89.3	GSM328066	Populus x canescens leaf control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.2	89.3	GSM328565	Populus x canescens root hypoxia_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.1	88.6	GSM328284	Populus x canescens root control_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

A co-expression module including the soybean gene, GmaAffx.53310.1.S1_at, orthologous to the query gene, PtpAffx.85797.1.S1_s_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.99	100.0	GmaAffx.53310.1.S1_at	At1g01540	-	-	1e-3	At2g45910	protein kinase family protein / U-box domain-containing protein	O.I.	H.G.	S.X.	Please select
0.48	67.7	Gma.8275.2.S1_at	At1g01540	-	-	1e-25	At1g17145	protein binding / zinc ion binding	O.I.	H.G.	S.X.	Please select
0.47	66.6	GmaAffx.85111.1.S1_at	At1g01540	-	-	7e-26	At1g05630	5PTASE13	O.I.	H.G.	S.X.	Please select
0.43	60.6	GmaAffx.83105.1.S1_at	At1g01540	-	-	1e+0	At1g35230	AGP5 (ARABINOGALACTAN-PROTEIN 5)	O.I.	H.G.	S.X.	Please select
0.42	59.3	GmaAffx.56888.1.S1_at	At1g01540	-	-	3e-3	At3g16230	RNA binding / catalytic	O.I.	H.G.	S.X.	Please select
0.37	51.7	Gma.3600.2.S1_at	At1g01540	-	-	4e-39	At1g43640	AtTLP5 (TUBBY LIKE PROTEIN 5)	O.I.	H.G.	S.X.	Please select
0.36	50.8	GmaAffx.56406.1.S1_at	At1g01540	-	-	8e-1	At2g43018	CPuORF17 (Conserved peptide upstream open reading frame 17)	O.I.	H.G.	S.X.	Please select
0.35	48.6	GmaAffx.15502.1.S1_at	At1g01540	-	-	8e-9	At5g15080	protein kinase, putative	O.I.	H.G.	S.X.	Please select
0.34	47.2	Gma.7090.2.S1_at	At1g01540	-	-	6e-8	At5g13560	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	46.1	GmaAffx.57700.1.S1_at	At1g01540	-	-	8e-20	At1g75850	VPS35B (VPS35 HOMOLOG B)	O.I.	H.G.	S.X.	Please select
0.32	43.7	GmaAffx.87877.1.S1_at	At1g01540	-	-	3e-6	At3g08720	S6K2 (ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2)	O.I.	H.G.	S.X.	Please select
0.32	43.7	GmaAffx.65978.2.S1_at	At1g01540	-	-	6e-1	At1g77746	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	39.0	Gma.1760.3.S1_at	At1g01540	-	-	5e-1	At2g36295	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	39.0	GmaAffx.49095.1.S1_at	At1g01540	-	-	2e-1	At1g31930	XLG3 (extra-large GTP-binding protein 3)	O.I.	H.G.	S.X.	Please select
0.29	39.0	Gma.4995.2.S1_at	At1g01540	-	-	3e-4	At5g13020	emsy N terminus domain-containing protein / ENT domain-containing protein	O.I.	H.G.	S.X.	Please select
0.29	39.0	GmaAffx.81793.1.S1_at	At1g01540	-	-	1e-1	At1g07520	scarecrow transcription factor family protein	O.I.	H.G.	S.X.	Please select
0.28	39.0	GmaAffx.86139.1.S1_at	At1g01540	-	-	5e-53	At2g40730	HEAT repeat-containing protein	O.I.	H.G.	S.X.	Please select
0.28	39.0	GmaAffx.84808.2.S1_at	At1g01540	-	-	4e+0	At2g33120	SAR1 (SYNAPTOBREVIN-RELATED PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.27	35.7	GmaAffx.4382.3.S1_at	At1g01540	-	-	9e-18	At1g18470	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.27	35.7	GmaAffx.77436.1.S1_at	At1g01540	-	-	3e-1	At3g52350	D111/G-patch domain-containing protein	O.I.	H.G.	S.X.	Please select
0.27	35.7	GmaAffx.11850.2.S1_at	At1g01540	-	-	8e-18	At4g32850	nPAP (NUCLEAR POLY(A) POLYMERASE)	O.I.	H.G.	S.X.	Please select
0.26	33.9	Gma.5562.3.S1_at	At1g01540	-	-	9e-28	At2g47070	SPL1 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 1)	O.I.	H.G.	S.X.	Please select
0.25	32.6	Gma.16280.2.S1_at	At1g01540	-	-	9e-1	At4g00335	RHB1A	O.I.	H.G.	S.X.	Please select
0.25	32.6	GmaAffx.14185.1.S1_at	At1g01540	-	-	7e-23	At1g25682	cell cycle control protein-related	O.I.	H.G.	S.X.	Please select
0.24	30.9	Gma.3754.2.S1_at	At1g01540	-	-	4e-16	At3g18430	calcium-binding EF hand family protein	O.I.	H.G.	S.X.	Please select
0.23	29.9	GmaAffx.71902.1.S1_at	At1g01540	-	-	3e-1	At5g58680	armadillo/beta-catenin repeat family protein	O.I.	H.G.	S.X.	Please select
0.22	28.1	GmaAffx.80857.1.S1_at	At1g01540	-	-	1e-40	At5g64813	LIP1 (Light Insensitive Period1)	O.I.	H.G.	S.X.	Please select
0.22	28.1	Gma.3595.2.S1_at	At1g01540	-	-	4e-4	At3g05090	transducin family protein / WD-40 repeat family protein	O.I.	H.G.	S.X.	Please select
0.22	28.1	GmaAffx.39895.1.S1_at	At1g01540	-	-	2e-7	At2g17790	VPS35A (VPS35 HOMOLOG A)	O.I.	H.G.	S.X.	Please select
0.22	28.1	GmaAffx.71225.1.S1_at	At1g01540	-	-	2e-8	At3g20250	APUM5 (Arabidopsis Pumilio 5)	O.I.	H.G.	S.X.	Please select
0.22	28.1	GmaAffx.82657.1.S1_at	At1g01540	-	-	9e-91	At4g03080	kelch repeat-containing serine/threonine phosphoesterase family protein	O.I.	H.G.	S.X.	Please select
0.21	26.6	Gma.4305.3.S1_a_at	At1g01540	-	-	5e-8	At5g57940	ATCNGC5 (CYCLIC NUCLEOTIDE GATED CHANNEL 5)	O.I.	H.G.	S.X.	Please select
0.20	25.1	GmaAffx.82992.1.S1_at	At1g01540	-	-	4e-29	At3g10380	SEC8 (SUBUNIT OF EXOCYST COMPLEX 8)	O.I.	H.G.	S.X.	Please select
0.20	25.1	Gma.4166.1.S1_s_at	At1g01540	-	-	2e-5	At3g12740	ALIS1 (ALA-INTERACTING SUBUNIT 1)	O.I.	H.G.	S.X.	Please select
0.20	25.1	GmaAffx.67790.1.S1_at	At1g01540	-	-	9e-17	At2g01690	binding	O.I.	H.G.	S.X.	Please select
0.20	25.1	GmaAffx.85390.1.S1_at	At1g01540	-	-	3e-43	At1g16010	magnesium transporter CorA-like family protein (MRS2-1)	O.I.	H.G.	S.X.	Please select
0.19	23.7	GmaAffx.18114.2.S1_at	At1g01540	-	-	3e-10	At3g05090	transducin family protein / WD-40 repeat family protein	O.I.	H.G.	S.X.	Please select
0.19	23.7	GmaAffx.90426.1.S1_s_at	At1g01540	urease accessory protein UreF	-	7e-7	At1g21840	UREF (urease accessory protein F)	O.I.	H.G.	S.X.	Please select
0.18	22.3	GmaAffx.12516.1.S1_at	At1g01540	-	-	3e-4	At3g58460	ATRBL15 (ARABIDOPSIS RHOMBOID-LIKE PROTEIN 15)	O.I.	H.G.	S.X.	Please select
0.17	21.2	Gma.8135.1.S1_at	At1g01540	GT-1	-	3e-36	At1g13450	DNA binding protein GT-1	O.I.	H.G.	S.X.	Please select
0.13	16.3	GmaAffx.90987.1.S1_at	At1g01540	-	-	1e+0	At5g64750	ABR1 (ABA REPRESSOR1)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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