Co-expression analysis

Gene ID	PtpAffx.85760.1.S1_s_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At3g25800: PP2AA2 (PROTEIN PHOSPHATASE 2A SUBUNIT A2) (HF=6e-6)
Module size	9 genes
NF	0.66
%ile	94.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.54	80.8	0.97	PtpAffx.85760.1.S1_s_at	CX181147	hypothetical protein	-	6e-6	At3g25800	PP2AA2 (PROTEIN PHOSPHATASE 2A SUBUNIT A2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.84	97.1	0.97	PtpAffx.156707.1.S1_s_at	BU873655	hypothetical protein	-	4e-4	At2g03110	RNA binding / nucleic acid binding	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.78	95.1	0.97	PtpAffx.120301.1.S1_s_at	CF235521	hypothetical protein	-	9e-2	At1g54360	TAF6B4 (TBP-ASSOCIATED FACTOR 6B4)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	0.97	PtpAffx.132468.1.S1_s_at	DN498520	-	-	4e-1	At3g12140	emsy N terminus domain-containing protein / ENT domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.64	88.4	0.97	PtpAffx.134857.2.S1_at	CN523812	hypothetical protein	-	2e-24	At2g32080	PUR ALPHA-1	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.61	87.0	0.98	PtpAffx.61544.1.A1_at	CA931045	hypothetical protein	-	4e-19	At3g59380	FTA (FARNESYLTRANSFERASE A)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.60	86.0	0.98	PtpAffx.3977.1.S1_s_at	CA821307	hypothetical protein	-	2e-18	At5g52040	ATRSP41	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.57	84.2	0.97	PtpAffx.134857.1.S1_at	CX185540	hypothetical protein	-	2e-43	At2g32080	PUR ALPHA-1	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.38	63.7	0.98	PtpAffx.163432.1.S1_s_at	BU812071	hypothetical protein	-	6e-58	At3g62120	tRNA synthetase class II (G, H, P and S) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.0	92.9	GSM328275	Populus x canescens leaf hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.2	89.3	GSM372042	Clone1979_LPI5_N-_8w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.1	88.6	GSM327402	Populus balsamifera_20071015_Etiolated_seedling_6d_2	GSE13990	Populus balsamifera developmental tissue series
2.0	88.0	GSM244431	non infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.0	88.0	GSM372043	Clone1979_LPI5_N-_8w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.0	88.0	GSM362886	Clone1979_LPI2_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.9	87.2	GSM328274	Populus x canescens leaf hypoxia_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.9	87.2	GSM372045	Clone1979_LPI5_N+_8w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.9	87.2	GSM372099	Clone3200_LPI5_N+_8w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.9	87.2	GSM328070	Populus x canescens leaf control_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage