Co-expression analysis

Gene ID	PtpAffx.8523.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At1g55360: unknown protein (HF=9e-106)
Module size	6 genes
NF	0.15
%ile	29.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.2	0.94	PtpAffx.8523.1.S1_at	CV239620	hypothetical protein	-	9e-106	At1g55360	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	0.94	PtpAffx.210287.1.S1_s_at	pmrna20235	hypothetical protein	-	1e-51	At5g24310	ABIL3 (ABL INTERACTOR-LIKE PROTEIN 3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.18	30.8	0.94	PtpAffx.65875.1.A1_at	CV257907	hypothetical protein	-	7e-3	At3g16060	kinesin motor family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.14	23.5	0.94	PtpAffx.96776.2.S1_at	CK087371	hypothetical protein	-	8e-53	At5g05080	UBC22 (ubiquitin-conjugating enzyme 22)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.07	11.6	0.95	PtpAffx.207524.1.S1_s_at	pmrna14936	aminophospholipid ATPase	-	8e-49	At5g04930	ALA1 (aminophospholipid ATPase1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.07	11.6	0.94	PtpAffx.143388.1.S1_at	CF230264	hypothetical protein	-	4e-3	At1g29370	kinase-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.7	97.9	GSM328483	Populus x canescens root control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.1	93.2	GSM328566	Populus x canescens root hypoxia_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.7	91.8	GSM328564	Populus x canescens root hypoxia_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.7	91.8	GSM362887	Clone1979_LPI5_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.6	91.3	GSM328567	Populus x canescens root hypoxia_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.4	90.4	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.0	88.0	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.0	88.0	GSM328565	Populus x canescens root hypoxia_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.7	85.5	GSM328562	Populus x canescens root hypoxia_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.5	83.5	GSM372090	Clone3200_LPI2_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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