Co-expression analysis

Gene ID PtpAffx.85113.1.A1_at
Gene name
Homology with ArabidopsisSimilar to At3g50770: calmodulin-related protein, putative (HF=2e-9)
Module size 6 genes
NF 0.34
%ile 59.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7393.60.84PtpAffx.85113.1.A1_atCX182523--2e-9At3g50770calmodulin-related protein, putativeO.I.H.G.S.X.
0.6791.10.91Ptp.5212.1.A1_atCV259751hypothetical protein-2e+0At1g35430unknown proteinO.I.H.G.S.X.
0.4067.00.87PtpAffx.221977.1.S1_s_atpmrna39130hypothetical protein-1e-1At2g4571040S ribosomal protein S27 (RPS27A)O.I.H.G.S.X.
0.2747.10.87PtpAffx.46298.1.S1_atCV268419outward rectifying potassium channel-2e+0At4g01840KCO5 (CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 5)O.I.H.G.S.X.
0.2340.50.85PtpAffx.73917.1.S1_atDN501347--6e+0At4g22160unknown proteinO.I.H.G.S.X.
0.1830.80.87PtpAffx.204567.1.S1_atpmrna8963SAUR family protein-2e-12At2g21200auxin-responsive protein, putativeO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.596.1GSM362888Clone1979_LPI5_N+_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
4.095.3GSM372100Clone3200_LPI5_N+_8w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.791.8GSM328059Populus x canescens leaf control_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.791.8GSM328274Populus x canescens leaf hypoxia_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.691.3GSM372099Clone3200_LPI5_N+_8w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.490.4GSM327657Populus balsamifera_Female_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.490.4GSM362887Clone1979_LPI5_N+_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.490.4GSM328070Populus x canescens leaf control_rep_05GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.289.3GSM328063Populus x canescens leaf control_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.289.3GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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