CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID PtpAffx.84979.1.S1_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At5g06720: peroxidase, putative (HF=2e-4)

Module size 13 genes

NF 0.53

%ile 83.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 91.1 0.89 PtpAffx.84979.1.S1_at CV254755 hypothetical protein - 2e-4 At5g06720 peroxidase, putative O.I. H.G. S.X.
0.67 91.1 0.90 Ptp.139.1.S1_at CV267827 aquaporin, MIP family, PIP subfamily - 3e-37 At5g60660 PIP2 O.I. H.G. S.X.
0.64 88.4 0.91 PtpAffx.220048.1.S1_at pmrna36320 hypothetical protein - 7e-7 At2g35270 DNA-binding protein-related O.I. H.G. S.X.
0.64 88.4 0.90 PtpAffx.205813.1.S1_at pmrna11499 hypothetical protein - 7e+0 At3g18160 peroxin-3 family protein O.I. H.G. S.X.
0.64 88.4 0.93 PtpAffx.206282.1.S1_at pmrna12451 hypothetical protein - 7e-11 At2g37900 proton-dependent oligopeptide transport (POT) family protein O.I. H.G. S.X.
0.61 87.0 0.89 PtpAffx.204601.1.S1_at pmrna9035 hypothetical protein - 2e+0 At5g52750 heavy-metal-associated domain-containing protein O.I. H.G. S.X.
0.54 80.8 0.93 PtpAffx.211928.1.S1_at pmrna23424 hypothetical protein - 2e+0 At2g33793 unknown protein O.I. H.G. S.X.
0.46 73.7 0.89 PtpAffx.221199.1.S1_at pmrna37897 hypothetical protein - 8e+0 At4g31460 ribosomal protein L28 family protein O.I. H.G. S.X.
0.45 72.3 0.90 PtpAffx.120558.1.A1_at CV274491 - - 1e+0 At3g24770 CLE41 (CLAVATA3/ESR-RELATED 41) O.I. H.G. S.X.
0.44 71.9 0.91 PtpAffx.208398.1.S1_s_at pmrna16696 hypothetical protein - 3e-3 At1g10480 ZFP5 (ZINC FINGER PROTEIN 5) O.I. H.G. S.X.
0.43 69.7 0.90 PtpAffx.25308.1.S1_x_at CN550378 - - 4e+0 At5g20970 heat shock family protein O.I. H.G. S.X.
0.38 63.7 0.91 PtpAffx.224629.1.S1_s_at pmrna43350 hypothetical protein - 7e-5 At2g29480 ATGSTU2 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 2) O.I. H.G. S.X.
0.32 55.2 0.90 PtpAffx.225565.1.S1_at pmrna44999 hypothetical protein - 8e-1 At1g64480 CBL8 (CALCINEURIN B-LIKE PROTEIN 8) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.4 98.2 GSM327407 Populus balsamifera_1006_root_midday_1 GSE13990 Populus balsamifera developmental tissue series
6.4 97.7 GSM327404 Populus balsamifera_1006_young_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
4.5 96.1 GSM327409 Populus balsamifera_1006_root_midday_3 GSE13990 Populus balsamifera developmental tissue series
3.9 95.1 GSM327380 Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_1 GSE13990 Populus balsamifera developmental tissue series
3.3 93.7 GSM327398 Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_3 GSE13990 Populus balsamifera developmental tissue series
1.9 87.2 GSM136938 Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
1.9 87.2 GSM327406 Populus balsamifera_1006_young_leaf_midday_3 GSE13990 Populus balsamifera developmental tissue series
1.9 87.2 GSM327660 Populus balsamifera_Male_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
1.8 86.4 GSM327656 Populus balsamifera_Female_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
1.7 85.5 GSM372095 Clone3200_LPI5_N-_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage