CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID PtpAffx.84497.1.S1_s_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At3g18140: transducin family protein / WD-40 repeat family protein (HF=9e-17)

Module size 6 genes

NF 0.58

%ile 88.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.63 88.1 0.97 PtpAffx.84497.1.S1_s_at CF231611 hypothetical protein - 9e-17 At3g18140 transducin family protein / WD-40 repeat family protein O.I. H.G. S.X.
0.67 91.1 0.97 PtpAffx.149909.1.S1_s_at AJ773011 hypothetical protein - 3e-141 At2g13560 malate oxidoreductase, putative O.I. H.G. S.X.
0.50 78.6 0.96 PtpAffx.150645.1.S1_at AJ778728 hypothetical protein - 2e-15 At1g75420 glycosyl transferase family 1 protein O.I. H.G. S.X.
0.50 78.6 0.97 Ptp.3086.1.S1_s_at BU832807 hypothetical protein - 4e-47 At2g13560 malate oxidoreductase, putative O.I. H.G. S.X.
0.44 71.9 0.97 PtpAffx.201217.1.S1_at pmrna2417 hypothetical protein - 2e-2 At2g14255 zinc ion binding O.I. H.G. S.X.
0.36 61.6 0.97 Ptp.5420.1.S1_s_at CK099218 hypothetical protein - 2e-30 At1g63770 peptidase M1 family protein O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.63	88.1	0.97	PtpAffx.84497.1.S1_s_at	CF231611	hypothetical protein	-	9e-17	At3g18140	transducin family protein / WD-40 repeat family protein	O.I.	H.G.	S.X.
0.67	91.1	0.97	PtpAffx.149909.1.S1_s_at	AJ773011	hypothetical protein	-	3e-141	At2g13560	malate oxidoreductase, putative	O.I.	H.G.	S.X.
0.50	78.6	0.96	PtpAffx.150645.1.S1_at	AJ778728	hypothetical protein	-	2e-15	At1g75420	glycosyl transferase family 1 protein	O.I.	H.G.	S.X.
0.50	78.6	0.97	Ptp.3086.1.S1_s_at	BU832807	hypothetical protein	-	4e-47	At2g13560	malate oxidoreductase, putative	O.I.	H.G.	S.X.
0.44	71.9	0.97	PtpAffx.201217.1.S1_at	pmrna2417	hypothetical protein	-	2e-2	At2g14255	zinc ion binding	O.I.	H.G.	S.X.
0.36	61.6	0.97	Ptp.5420.1.S1_s_at	CK099218	hypothetical protein	-	2e-30	At1g63770	peptidase M1 family protein	O.I.	H.G.	S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.67	91.1	0.96	PtpAffx.201028.1.S1_at	pmrna2012	hypothetical protein	-	2e-19	At5g14220	HEMG2	O.I.	H.G.	S.X.
0.50	78.6	0.95	Ptp.4631.1.S1_s_at	CN549463	hypothetical protein	-	4e-47	At4g02680	EOL1 (ETO1-LIKE 1)	O.I.	H.G.	S.X.
0.50	78.6	0.95	PtpAffx.221350.1.S1_at	pmrna38193	hypothetical protein	-	4e-8	At4g10070	KH domain-containing protein	O.I.	H.G.	S.X.
0.50	78.6	0.96	PtpAffx.132851.1.S1_at	BU834460	hypothetical protein	-	5e-31	At5g48220	indole-3-glycerol phosphate synthase, putative	O.I.	H.G.	S.X.
0.46	73.7	0.94	PtpAffx.132904.1.S1_at	CX187091	hypothetical protein	-	1e-22	At4g09520	catalytic/ metal ion binding / phosphoglycerate mutase	O.I.	H.G.	S.X.
0.44	71.9	0.95	PtpAffx.201510.1.S1_at	pmrna2974	hypothetical protein	-	8e-2	At2g22320	unknown protein	O.I.	H.G.	S.X.
0.40	67.0	0.96	PtpAffx.217501.1.S1_s_at	pmrna32788	hypothetical protein	-	8e-7	At1g22540	proton-dependent oligopeptide transport (POT) family protein	O.I.	H.G.	S.X.
0.40	67.0	0.96	PtpAffx.157124.1.S1_at	CK106225	hypothetical protein	-	3e-11	At5g51340	unknown protein	O.I.	H.G.	S.X.
0.36	61.6	0.94	PtpAffx.156315.1.S1_at	CN550016	hypothetical protein	-	5e-57	At4g00570	malate oxidoreductase, putative	O.I.	H.G.	S.X.
0.36	61.6	0.95	PtpAffx.150480.1.S1_s_at	DN498956	hypothetical protein	-	9e-1	At5g52340	ATEXO70A2 (exocyst subunit EXO70 family protein A2)	O.I.	H.G.	S.X.
0.36	61.6	0.96	Ptp.3293.1.S1_s_at	CF231778	hypothetical protein	-	4e-20	At1g43190	polypyrimidine tract-binding protein, putative / heterogeneous nuclear ribonucleoprotein, putative	O.I.	H.G.	S.X.
0.36	61.6	0.96	PtpAffx.3207.1.S1_a_at	CV244358	hypothetical protein	-	6e-12	At1g29810	dehydratase family	O.I.	H.G.	S.X.
0.33	57.5	0.93	PtpAffx.146083.1.S1_s_at	BU878103	hypothetical protein	-	7e-3	At4g02680	EOL1 (ETO1-LIKE 1)	O.I.	H.G.	S.X.
0.33	57.5	0.95	PtpAffx.111842.1.A1_s_at	BU810240	hypothetical protein	-	2e-13	At2g34630	geranyl diphosphate synthase, putative / GPPS, putative / dimethylallyltransferase, putative / prenyl transferase, putative	O.I.	H.G.	S.X.
0.33	57.5	0.95	PtpAffx.34699.2.S1_at	CK091654	hypothetical protein	-	7e-36	At4g36690	ATU2AF65A	O.I.	H.G.	S.X.
0.33	57.5	0.96	Ptp.4771.1.S1_at	BU893475	hypothetical protein	-	1e-10	At4g19670	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.
0.33	57.5	0.97	PtpAffx.149265.1.S1_s_at	CV131132	hypothetical protein	-	3e-54	At2g14260	PIP	O.I.	H.G.	S.X.
0.32	55.2	0.94	PtpAffx.211631.1.S1_at	pmrna22792	hypothetical protein	-	4e+0	At4g10457	SCRL1 (SCR-Like 1)	O.I.	H.G.	S.X.
0.32	55.2	0.94	PtpAffx.85649.1.S1_at	BU836231	-	-	7e-27	At4g17050	UGLYAH (UREIDOGLYCINE AMINOHYDROLASE)	O.I.	H.G.	S.X.
0.31	53.7	0.96	PtpAffx.2360.3.S1_at	CX179099	hypothetical protein	-	2e-18	At4g39280	phenylalanyl-tRNA synthetase, putative / phenylalanine--tRNA ligase, putative	O.I.	H.G.	S.X.
0.31	53.7	0.96	PtpAffx.124719.1.S1_s_at	BU837218	hypothetical protein	-	3e-42	At4g38240	CGL1 (COMPLEX GLYCAN LESS 1)	O.I.	H.G.	S.X.
0.29	50.5	0.94	PtpAffx.118751.1.S1_at	CX174734	hypothetical protein	-	3e-45	At2g27600	SKD1 (SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1)	O.I.	H.G.	S.X.
0.29	50.5	0.93	PtpAffx.204922.1.S1_at	pmrna9736	hypothetical protein	-	4e-12	At3g47000	glycosyl hydrolase family 3 protein	O.I.	H.G.	S.X.
0.29	50.5	0.94	PtpAffx.145560.1.S1_at	BI071542	hypothetical protein	-	2e+0	At1g30800	-	O.I.	H.G.	S.X.
0.29	50.5	0.95	PtpAffx.205989.1.S1_s_at	pmrna11876	histone acetyltransferase complex component	-	3e-5	At3g07740	ADA2A (HOMOLOG OF YEAST ADA2 2A)	O.I.	H.G.	S.X.
0.27	47.1	0.95	PtpAffx.210955.1.S1_at	pmrna21524	-	-	7e-20	At3g05040	HST (HASTY)	O.I.	H.G.	S.X.
0.27	47.1	0.96	PtpAffx.83555.1.S1_s_at	BI068935	hypothetical protein	-	3e-4	At1g14850	NUP155	O.I.	H.G.	S.X.
0.26	45.2	0.92	PtpAffx.6319.1.S1_s_at	CV238457	pseudo response regulator	-	5e-16	At5g02810	PRR7 (PSEUDO-RESPONSE REGULATOR 7)	O.I.	H.G.	S.X.
0.26	45.2	0.95	PtpAffx.214050.1.S1_at	pmrna27353	-	-	1e+0	At5g45469	unknown protein	O.I.	H.G.	S.X.
0.25	43.6	0.94	PtpAffx.144589.1.S1_at	CV240372	hypothetical protein	-	9e-21	At5g27660	catalytic/ protein binding / serine-type endopeptidase/ serine-type peptidase	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.0 95.3 GSM328077 Populus x canescens leaf control_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.8 94.9 GSM328059 Populus x canescens leaf control_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.9 92.5 GSM328275 Populus x canescens leaf hypoxia_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.6 91.3 GSM328274 Populus x canescens leaf hypoxia_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.6 91.3 GSM328559 Populus x canescens root control_rep_10 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.5 90.9 GSM328558 Populus x canescens root control_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.4 90.4 GSM328292 Populus x canescens root control_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.4 90.4 GSM328534 Populus x canescens root control_rep_07 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.2 89.3 GSM328484 Populus x canescens root hypoxia_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.2 89.3 GSM328285 Populus x canescens root control_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
4.0	95.3	GSM328077	Populus x canescens leaf control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.8	94.9	GSM328059	Populus x canescens leaf control_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.9	92.5	GSM328275	Populus x canescens leaf hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.6	91.3	GSM328274	Populus x canescens leaf hypoxia_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.6	91.3	GSM328559	Populus x canescens root control_rep_10	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.5	90.9	GSM328558	Populus x canescens root control_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.4	90.4	GSM328292	Populus x canescens root control_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.4	90.4	GSM328534	Populus x canescens root control_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.2	89.3	GSM328484	Populus x canescens root hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.2	89.3	GSM328285	Populus x canescens root control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

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Gene ID	PtpAffx.84497.1.S1_s_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At3g18140: transducin family protein / WD-40 repeat family protein (HF=9e-17)
Module size	6 genes
NF	0.58
%ile	88.2

Co-expression analysis

Gene ID PtpAffx.84497.1.S1_s_at Gene name hypothetical protein Homology with ArabidopsisSimilar to At3g18140: transducin family protein / WD-40 repeat family protein (HF=9e-17) Module size 6 genes NF 0.58 %ile 88.2

Co-expressed genes

Specific experiments for the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgareOryza_sativaTriticum_aestivumVitis_viniferaZea_mays

Gene ID PtpAffx.84497.1.S1_s_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At3g18140: transducin family protein / WD-40 repeat family protein (HF=9e-17)

Module size 6 genes

NF 0.58

%ile 88.2

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays