Co-expression analysis

Gene ID	PtpAffx.84497.1.S1_s_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At3g18140: transducin family protein / WD-40 repeat family protein (HF=9e-17)
Module size	6 genes
NF	0.58
%ile	88.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.63	88.1	0.97	PtpAffx.84497.1.S1_s_at	CF231611	hypothetical protein	-	9e-17	At3g18140	transducin family protein / WD-40 repeat family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	0.97	PtpAffx.149909.1.S1_s_at	AJ773011	hypothetical protein	-	3e-141	At2g13560	malate oxidoreductase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.96	PtpAffx.150645.1.S1_at	AJ778728	hypothetical protein	-	2e-15	At1g75420	glycosyl transferase family 1 protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.97	Ptp.3086.1.S1_s_at	BU832807	hypothetical protein	-	4e-47	At2g13560	malate oxidoreductase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	0.97	PtpAffx.201217.1.S1_at	pmrna2417	hypothetical protein	-	2e-2	At2g14255	zinc ion binding	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	0.97	Ptp.5420.1.S1_s_at	CK099218	hypothetical protein	-	2e-30	At1g63770	peptidase M1 family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.0	95.3	GSM328077	Populus x canescens leaf control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.8	94.9	GSM328059	Populus x canescens leaf control_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.9	92.5	GSM328275	Populus x canescens leaf hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.6	91.3	GSM328274	Populus x canescens leaf hypoxia_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.6	91.3	GSM328559	Populus x canescens root control_rep_10	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.5	90.9	GSM328558	Populus x canescens root control_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.4	90.4	GSM328292	Populus x canescens root control_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.4	90.4	GSM328534	Populus x canescens root control_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.2	89.3	GSM328484	Populus x canescens root hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.2	89.3	GSM328285	Populus x canescens root control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

A co-expression module including the maize gene, Zm.3879.1.A1_at, orthologous to the query gene, PtpAffx.84497.1.S1_s_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.55	71.6	Zm.3879.1.A1_at	At3g18140	hypothetical protein LOC100191700	-	7e-23	At3g18140	transducin family protein / WD-40 repeat family protein	O.I.	H.G.	S.X.	Please select
0.73	89.9	Zm.18404.1.S1_at	At3g18140	hypothetical protein LOC100278048	-	2e+0	At5g30341	unknown protein	O.I.	H.G.	S.X.	Please select
0.71	88.2	Zm.6.1.A1_at	At3g18140	ferredoxin-dependent glutamate synthase1	-	5e-85	At5g04140	GLU1 (GLUTAMATE SYNTHASE 1)	O.I.	H.G.	S.X.	Please select
0.71	88.2	Zm.16327.1.S1_at	At3g18140	Hypothetical protein LOC100216593	-	9e-7	At1g07770	RPS15A (ribosomal protein s15a)	O.I.	H.G.	S.X.	Please select
0.67	85.8	Zm.6.2.A1_at	At3g18140	-	-	4e-1	At5g17650	glycine/proline-rich protein	O.I.	H.G.	S.X.	Please select
0.52	67.3	Zm.2591.1.A1_a_at	At3g18140	autophagy-related 8b /// autophagy-related 8c /// hypothetical protein AY109516	-	4e-51	At1g62040	ATG8C (autophagy 8c)	O.I.	H.G.	S.X.	Please select
0.46	58.4	Zm.14088.1.A1_at	At3g18140	aconitate hydratase, cytoplasmic	-	4e-19	At2g05710	aconitate hydratase, cytoplasmic, putative / citrate hydro-lyase/aconitase, putative	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

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