Co-expression analysis

Gene ID	PtpAffx.84497.1.S1_s_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At3g18140: transducin family protein / WD-40 repeat family protein (HF=9e-17)
Module size	6 genes
NF	0.58
%ile	88.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.63	88.1	0.97	PtpAffx.84497.1.S1_s_at	CF231611	hypothetical protein	-	9e-17	At3g18140	transducin family protein / WD-40 repeat family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	0.97	PtpAffx.149909.1.S1_s_at	AJ773011	hypothetical protein	-	3e-141	At2g13560	malate oxidoreductase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.96	PtpAffx.150645.1.S1_at	AJ778728	hypothetical protein	-	2e-15	At1g75420	glycosyl transferase family 1 protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.97	Ptp.3086.1.S1_s_at	BU832807	hypothetical protein	-	4e-47	At2g13560	malate oxidoreductase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	0.97	PtpAffx.201217.1.S1_at	pmrna2417	hypothetical protein	-	2e-2	At2g14255	zinc ion binding	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	0.97	Ptp.5420.1.S1_s_at	CK099218	hypothetical protein	-	2e-30	At1g63770	peptidase M1 family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.0	95.3	GSM328077	Populus x canescens leaf control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.8	94.9	GSM328059	Populus x canescens leaf control_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.9	92.5	GSM328275	Populus x canescens leaf hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.6	91.3	GSM328274	Populus x canescens leaf hypoxia_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.6	91.3	GSM328559	Populus x canescens root control_rep_10	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.5	90.9	GSM328558	Populus x canescens root control_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.4	90.4	GSM328292	Populus x canescens root control_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.4	90.4	GSM328534	Populus x canescens root control_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.2	89.3	GSM328484	Populus x canescens root hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.2	89.3	GSM328285	Populus x canescens root control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

A co-expression module including the wheat gene, TaAffx.88833.1.S1_at, orthologous to the query gene, PtpAffx.84497.1.S1_s_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	TaAffx.88833.1.S1_at	At3g18140	-	-	5e-16	At3g18140	transducin family protein / WD-40 repeat family protein	O.I.	H.G.	S.X.	Please select
0.41	59.6	Ta.1552.1.S1_at	At3g18140	-	-	1e-8	At3g21175	ZML1 (ZIM-LIKE 1)	O.I.	H.G.	S.X.	Please select
0.40	58.4	TaAffx.51129.1.S1_at	At3g18140	-	-	3e-1	At4g10970	unknown protein	O.I.	H.G.	S.X.	Please select
0.37	53.0	Ta.6000.2.S1_a_at	At3g18140	-	-	4e+0	At5g53000	TAP46 (2A phosphatase associated protein of 46 kD)	O.I.	H.G.	S.X.	Please select
0.35	49.8	Ta.24231.2.S1_at	At3g18140	-	-	2e+1	At5g18870	inosine-uridine preferring nucleoside hydrolase-related	O.I.	H.G.	S.X.	Please select
0.32	44.4	Ta.1713.1.S1_at	At3g18140	-	-	1e-1	At5g41960	unknown protein	O.I.	H.G.	S.X.	Please select
0.31	42.7	Ta.24358.1.S1_s_at	At3g18140	-	-	3e+0	At1g22410	2-dehydro-3-deoxyphosphoheptonate aldolase, putative / 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase, putative / DAHP synthetase, putative	O.I.	H.G.	S.X.	Please select
0.30	40.9	Ta.1079.2.S1_a_at	At3g18140	-	-	5e-12	At4g21110	G10 family protein	O.I.	H.G.	S.X.	Please select
0.30	40.9	TaAffx.91476.1.S1_at	At3g18140	-	-	7e-5	At3g17590	BSH (BUSHY GROWTH)	O.I.	H.G.	S.X.	Please select
0.29	39.2	TaAffx.25378.1.S1_s_at	At3g18140	-	-	4e+0	At5g24510	60s acidic ribosomal protein P1, putative	O.I.	H.G.	S.X.	Please select
0.28	39.2	Ta.4791.2.S1_at	At3g18140	-	-	2e-12	At5g51280	DEAD-box protein abstrakt, putative	O.I.	H.G.	S.X.	Please select
0.27	35.6	Ta.6824.2.S1_a_at	At3g18140	-	-	2e+1	At5g28590	DNA-binding protein-related	O.I.	H.G.	S.X.	Please select
0.26	33.6	Ta.7295.3.S1_a_at	At3g18140	-	-	4e-3	At2g23420	NAPRT2 (NICOTINATE PHOSPHORIBOSYLTRANSFERASE 2)	O.I.	H.G.	S.X.	Please select
0.24	30.3	Ta.7163.3.S1_at	At3g18140	-	-	7e-5	At3g11397	PRA1.A3 (PRENYLATED RAB ACCEPTOR 1.A3)	O.I.	H.G.	S.X.	Please select
0.23	29.0	Ta.3716.1.S1_at	At3g18140	RUB1-conjugating enzyme	-	2e-12	At2g18600	RUB1-conjugating enzyme, putative	O.I.	H.G.	S.X.	Please select
0.22	27.1	TaAffx.102092.1.S1_at	At3g18140	-	-	4e+0	At5g35631	unknown protein	O.I.	H.G.	S.X.	Please select
0.21	25.5	TaAffx.61855.2.S1_at	At3g18140	-	-	4e+0	At3g44150	unknown protein	O.I.	H.G.	S.X.	Please select
0.21	25.5	TaAffx.121937.1.S1_at	At3g18140	-	-	5e-9	At1g79090	unknown protein	O.I.	H.G.	S.X.	Please select
0.20	24.0	Ta.13635.2.S1_a_at	At3g18140	-	-	1e-11	At1g55270	kelch repeat-containing F-box family protein	O.I.	H.G.	S.X.	Please select
0.19	22.4	Ta.3463.3.S1_a_at	At3g18140	-	-	2e-5	At4g36410	UBC17 (UBIQUITIN-CONJUGATING ENZYME 17)	O.I.	H.G.	S.X.	Please select
0.18	21.0	TaAffx.102859.1.S1_at	At3g18140	-	-	3e-1	At5g40250	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.17	19.8	Ta.14547.1.S1_at	At3g18140	-	-	6e-4	At1g26665	-	O.I.	H.G.	S.X.	Please select
0.17	19.8	Ta.3463.1.S1_x_at	At3g18140	-	-	4e-20	At5g42990	UBC18 (ubiquitin-conjugating enzyme 18)	O.I.	H.G.	S.X.	Please select
0.16	18.2	Ta.28571.1.S1_s_at	At3g18140	-	-	8e-5	At3g47810	MAG1 (MAIGO 1)	O.I.	H.G.	S.X.	Please select
0.16	18.2	Ta.14040.1.A1_at	At3g18140	-	-	1e-1	At1g03970	GBF4	O.I.	H.G.	S.X.	Please select
0.13	14.6	Ta.30747.1.S1_a_at	At3g18140	-	-	5e+0	At5g01712	CPuORF48 (Conserved peptide upstream open reading frame 48)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Vitis_vinifera

Zea_mays

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