Co-expression analysis

Gene ID	PtpAffx.84497.1.S1_s_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At3g18140: transducin family protein / WD-40 repeat family protein (HF=9e-17)
Module size	6 genes
NF	0.58
%ile	88.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.63	88.1	0.97	PtpAffx.84497.1.S1_s_at	CF231611	hypothetical protein	-	9e-17	At3g18140	transducin family protein / WD-40 repeat family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	0.97	PtpAffx.149909.1.S1_s_at	AJ773011	hypothetical protein	-	3e-141	At2g13560	malate oxidoreductase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.96	PtpAffx.150645.1.S1_at	AJ778728	hypothetical protein	-	2e-15	At1g75420	glycosyl transferase family 1 protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.97	Ptp.3086.1.S1_s_at	BU832807	hypothetical protein	-	4e-47	At2g13560	malate oxidoreductase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	0.97	PtpAffx.201217.1.S1_at	pmrna2417	hypothetical protein	-	2e-2	At2g14255	zinc ion binding	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	0.97	Ptp.5420.1.S1_s_at	CK099218	hypothetical protein	-	2e-30	At1g63770	peptidase M1 family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.0	95.3	GSM328077	Populus x canescens leaf control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.8	94.9	GSM328059	Populus x canescens leaf control_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.9	92.5	GSM328275	Populus x canescens leaf hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.6	91.3	GSM328274	Populus x canescens leaf hypoxia_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.6	91.3	GSM328559	Populus x canescens root control_rep_10	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.5	90.9	GSM328558	Populus x canescens root control_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.4	90.4	GSM328292	Populus x canescens root control_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.4	90.4	GSM328534	Populus x canescens root control_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.2	89.3	GSM328484	Populus x canescens root hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.2	89.3	GSM328285	Populus x canescens root control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

A co-expression module including the barley gene, HW01E12u_x_at, orthologous to the query gene, PtpAffx.84497.1.S1_s_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.95	99.2	HW01E12u_x_at	At3g18140	-	-	1e+0	At3g49820	unknown protein	O.I.	H.G.	S.X.	Please select
0.59	75.8	HW08D08u_x_at	At3g18140	-	-	2e+0	At2g24060	translation initiation factor 3 (IF-3) family protein	O.I.	H.G.	S.X.	Please select
0.51	67.5	Contig22941_at	At3g18140	-	-	1e+0	At5g14670	ATARFA1B (ADP-ribosylation factor A1B)	O.I.	H.G.	S.X.	Please select
0.50	66.9	AF474072_CDS-4_at	At3g18140	-	-	1e+0	At5g05810	ATL43	O.I.	H.G.	S.X.	Please select
0.48	63.2	HT10D10u_x_at	At3g18140	-	-	9e-1	At4g13720	inosine triphosphate pyrophosphatase, putative / HAM1 family protein	O.I.	H.G.	S.X.	Please select
0.47	62.2	HS05I23r_at	At3g18140	-	-	8e+0	At3g22435	XS domain-containing protein	O.I.	H.G.	S.X.	Please select
0.47	62.2	EBro08_SQ009_F01_at	At3g18140	-	-	2e-1	At1g70490	ARFA1D	O.I.	H.G.	S.X.	Please select
0.46	61.0	HM01C02w_x_at	At3g18140	-	-	2e+0	At1g34280	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	58.9	Contig19421_at	At3g18140	-	-	3e-1	At1g18380	-	O.I.	H.G.	S.X.	Please select
0.39	50.5	V00087.1_at	At3g18140	-	-	3e-1	At5g43525	-	O.I.	H.G.	S.X.	Please select
0.38	49.5	HA31G21r_at	At3g18140	-	-	2e+0	At5g17190	unknown protein	O.I.	H.G.	S.X.	Please select
0.35	45.1	EBro08_SQ001_H04_at	At3g18140	-	-	1e+1	At5g23027	unknown protein	O.I.	H.G.	S.X.	Please select
0.35	45.1	HVSMEg0010M12r2_at	At3g18140	-	-	2e-8	At1g74880	NDH-O (NAD(P)H:plastoquinone dehydrogenase complex subunit O)	O.I.	H.G.	S.X.	Please select
0.34	43.6	EBro02_SQ006_I14_at	At3g18140	-	-	6e-1	At3g61111	structural constituent of ribosome	O.I.	H.G.	S.X.	Please select
0.33	42.6	Contig22963_at	At3g18140	-	-	2e+0	At2g43930	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.33	42.6	HVSMEm0018O23r2_at	At3g18140	-	-	1e-3	At4g23150	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.32	40.3	HY03E24u_at	At3g18140	-	-	2e+0	At4g26720	PPX1 (PROTEIN PHOSPHATASE X 1)	O.I.	H.G.	S.X.	Please select
0.31	38.6	HY02C19u_at	At3g18140	-	-	5e+0	At4g15610	integral membrane family protein	O.I.	H.G.	S.X.	Please select
0.31	38.6	HA30O17r_at	At3g18140	-	-	9e-10	At4g33865	40S ribosomal protein S29 (RPS29C)	O.I.	H.G.	S.X.	Please select
0.31	38.6	Contig10097_at	At3g18140	-	-	4e-1	At3g16450	jacalin lectin family protein	O.I.	H.G.	S.X.	Please select
0.28	35.5	EBro02_SQ008_P15_at	At3g18140	-	-	1e+1	At5g43211	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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