Co-expression analysis

Gene ID	PtpAffx.84357.1.A1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At4g22930: PYR4 (PYRIMIDIN 4) (HF=5e-12)
Module size	33 genes
NF	0.42
%ile	70.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.88	97.7	0.92	PtpAffx.84357.1.A1_at	CK088403	hypothetical protein	-	5e-12	At4g22930	PYR4 (PYRIMIDIN 4)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.68	91.3	0.93	Ptp.1068.1.S1_at	CV277014	-	-	1e-13	At5g03080	phosphatidic acid phosphatase-related / PAP2-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	0.96	Ptp.4119.1.S1_at	DN499743	hypothetical protein	-	1e-9	At4g00740	dehydration-responsive protein-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.63	88.1	0.95	PtpAffx.150944.1.S1_at	CK102787	-	-	5e-9	At3g19260	LOH2 (LAG ONE HOMOLOGUE 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.57	84.2	0.95	Ptp.551.1.S1_at	BU820526	hypothetical protein	-	3e-33	At1g07510	ftsh10 (FtsH protease 10)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.55	82.2	0.96	Ptp.939.3.A1_at	CK089601	-	-	3e+0	Atcg00905	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.54	80.8	0.96	PtpAffx.39317.1.S1_at	AJ774486	hypothetical protein	-	9e-11	At4g00570	malate oxidoreductase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.95	Ptp.8037.1.S1_at	DN497610	-	-	3e+0	At1g66380	MYB114 (myb domain protein 114)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.48	75.4	0.94	Ptp.3309.1.S1_at	BU813099	hypothetical protein	-	1e-20	At2g07050	CAS1 (cycloartenol synthase 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.47	74.6	0.94	Ptp.5012.1.S1_at	BU836751	-	-	3e-14	At4g36660	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.46	73.7	0.95	PtpAffx.7177.1.S1_at	CV234119	hypothetical protein	-	2e-18	At3g17430	phosphate translocator-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.46	73.7	0.96	Ptp.7874.1.S1_at	DN500631	-	-	2e+0	At1g60370	F-box family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.46	73.7	0.95	Ptp.3163.1.A1_at	DN484682	hypothetical protein	-	4e-1	At1g58420	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.46	73.7	0.94	Ptp.7659.1.S1_at	DN488737	hypothetical protein	-	2e-12	At3g15410	leucine-rich repeat family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.43	69.7	0.96	Ptp.4551.1.S1_at	BU826620	condensin complex components subunit	-	7e-1	At5g62165	AGL42 (AGAMOUS LIKE 42)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.42	68.6	0.93	Ptp.338.1.A1_at	CK088441	hypothetical protein	-	3e-20	At5g32450	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.41	67.7	0.94	Ptp.6461.1.A1_at	CX282788	hypothetical protein	-	3e-50	At1g47830	clathrin coat assembly protein, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.41	67.7	0.95	PtpAffx.80166.1.S1_at	DN488320	hypothetical protein	-	7e-10	At1g26300	BSD domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.41	67.7	0.95	Ptp.1714.1.A1_a_at	CK093174	hypothetical protein	-	2e+0	At4g03505	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.94	PtpAffx.10823.1.S1_s_at	CV269265	cc-nbs-lrr resistance protein	-	2e+1	At5g21920	YGGT family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.39	64.6	0.95	Ptp.1153.2.S1_at	CK100713	-	-	4e-1	At1g13870	DRL1 (DEFORMED ROOTS AND LEAVES 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.39	64.6	0.97	Ptp.751.1.S1_at	CK088694	hypothetical protein	-	2e-27	At1g20110	zinc finger (FYVE type) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.38	63.7	0.95	Ptp.3156.1.S1_s_at	CV269705	-	-	8e+0	At3g60550	CYCP3	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.38	63.7	0.94	Ptp.6678.1.S1_at	CV230067	hypothetical protein	-	2e+0	At1g34910	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.37	62.3	0.95	PtpAffx.52331.1.A1_at	CK088101	hypothetical protein	-	5e+0	At3g25014	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	0.94	PtpAffx.40255.1.S1_at	CX658603	-	-	1e+0	At4g30800	40S ribosomal protein S11 (RPS11B)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.34	58.3	0.96	Ptp.2938.1.S1_at	BU834752	hypothetical protein	-	2e-30	At1g44820	aminoacylase, putative / N-acyl-L-amino-acid amidohydrolase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.34	58.3	0.95	PtpAffx.26817.1.S1_at	CF229627	hypothetical protein	-	3e-8	At2g25680	MOT1 (molybdate transporter 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.34	58.3	0.94	Ptp.954.1.S1_at	CK089711	hypothetical protein	-	6e-19	At2g21230	bZIP family transcription factor	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.31	53.7	0.95	PtpAffx.7780.1.S1_at	BU885713	hypothetical protein	-	8e-28	At5g06060	tropinone reductase, putative / tropine dehydrogenase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.30	52.0	0.95	Ptp.2272.1.A1_at	CK087425	-	-	4e-7	At2g47470	UNE5 (UNFERTILIZED EMBRYO SAC 5)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.25	43.6	0.96	Ptp.4507.1.A1_at	DN488435	hypothetical protein	-	5e-1	At5g17510	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.17	29.1	0.95	PtpAffx.45729.2.S1_at	BU822004	-	-	8e-1	At4g31800	WRKY18	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.3	89.8	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.0	88.0	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM328105	Populus x canescens leaf hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.9	87.2	GSM328066	Populus x canescens leaf control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.8	86.4	GSM328532	Populus x canescens root hypoxia_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.8	86.4	GSM328062	Populus x canescens leaf control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.8	86.4	GSM327406	Populus balsamifera_1006_young_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series
1.8	86.4	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.7	85.5	GSM328059	Populus x canescens leaf control_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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