Co-expression analysis

Gene ID	PtpAffx.84152.1.A1_s_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At1g71350: eukaryotic translation initiation factor SUI1 family protein (HF=1e-22)
Module size	6 genes
NF	0.67
%ile	94.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.2	0.97	PtpAffx.84152.1.A1_s_at	CK097049	hypothetical protein	-	1e-22	At1g71350	eukaryotic translation initiation factor SUI1 family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.60	86.0	0.97	PtpAffx.37317.1.A1_a_at	CV246331	hypothetical protein	-	2e-30	At5g07120	SNX2b (SORTING NEXIN 2b)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.60	86.0	0.97	PtpAffx.1466.1.S1_at	AJ770504	hypothetical protein	-	8e-6	At5g25060	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.57	84.2	0.97	PtpAffx.35315.1.S1_at	CF229140	hypothetical protein	-	1e+0	At5g54850	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	0.97	Ptp.7904.1.S1_at	BU809020	hypothetical protein	-	8e-1	At2g27250	CLV3 (CLAVATA3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	0.97	Ptp.3766.1.S1_at	CV249196	hypothetical protein	-	2e-59	At3g42830	ring-box protein Roc1/Rbx1/Hrt1, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.1	95.5	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.6	91.3	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.3	89.8	GSM328105	Populus x canescens leaf hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.2	89.3	GSM328292	Populus x canescens root control_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.0	88.0	GSM328560	Populus x canescens root control_rep_11	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.9	87.2	GSM328533	Populus x canescens root hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.8	86.4	GSM327380	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_1	GSE13990	Populus balsamifera developmental tissue series
1.8	86.4	GSM328567	Populus x canescens root hypoxia_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.8	86.4	GSM327409	Populus balsamifera_1006_root_midday_3	GSE13990	Populus balsamifera developmental tissue series
1.8	86.4	GSM328564	Populus x canescens root hypoxia_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

A co-expression module including the wheat gene, TaAffx.87235.1.S1_at, orthologous to the query gene, PtpAffx.84152.1.A1_s_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	TaAffx.87235.1.S1_at	At1g71350	-	-	9e-1	At1g02780	emb2386 (embryo defective 2386)	O.I.	H.G.	S.X.	Please select
0.03	4.7	TaAffx.79852.1.S1_at	At1g71350	-	-	2e-2	At1g34770	MAGE-8 antigen-related	O.I.	H.G.	S.X.	Please select
0.02	3.6	TaAffx.26983.1.S1_at	At1g71350	-	-	1e-2	At1g49770	RGE1 (RETARDED GROWTH OF EMBRYO 1)	O.I.	H.G.	S.X.	Please select
0.01	2.4	Ta.9015.3.S1_x_at	At1g71350	-	-	3e-1	At3g12260	complex 1 family protein / LVR family protein	O.I.	H.G.	S.X.	Please select
0.01	2.4	TaAffx.56066.1.S1_at	At1g71350	-	-	1e+0	At5g07410	pectinesterase family protein	O.I.	H.G.	S.X.	Please select
0.01	2.4	Ta.16223.1.S1_at	At1g71350	-	-	4e+0	At3g60966	protein binding / zinc ion binding	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Vitis_vinifera

Zea_mays

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