CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID PtpAffx.84152.1.A1_s_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At1g71350: eukaryotic translation initiation factor SUI1 family protein (HF=1e-22)

Module size 6 genes

NF 0.67

%ile 94.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 99.2 0.97 PtpAffx.84152.1.A1_s_at CK097049 hypothetical protein - 1e-22 At1g71350 eukaryotic translation initiation factor SUI1 family protein O.I. H.G. S.X.
0.60 86.0 0.97 PtpAffx.37317.1.A1_a_at CV246331 hypothetical protein - 2e-30 At5g07120 SNX2b (SORTING NEXIN 2b) O.I. H.G. S.X.
0.60 86.0 0.97 PtpAffx.1466.1.S1_at AJ770504 hypothetical protein - 8e-6 At5g25060 RNA recognition motif (RRM)-containing protein O.I. H.G. S.X.
0.57 84.2 0.97 PtpAffx.35315.1.S1_at CF229140 hypothetical protein - 1e+0 At5g54850 unknown protein O.I. H.G. S.X.
0.44 71.9 0.97 Ptp.7904.1.S1_at BU809020 hypothetical protein - 8e-1 At2g27250 CLV3 (CLAVATA3) O.I. H.G. S.X.
0.44 71.9 0.97 Ptp.3766.1.S1_at CV249196 hypothetical protein - 2e-59 At3g42830 ring-box protein Roc1/Rbx1/Hrt1, putative O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.1 95.5 GSM327660 Populus balsamifera_Male_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.6 91.3 GSM136938 Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.3 89.8 GSM328105 Populus x canescens leaf hypoxia_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.2 89.3 GSM328292 Populus x canescens root control_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.0 88.0 GSM328560 Populus x canescens root control_rep_11 GSE13109 Effect of hypoxia on gene expression in Grey poplar
1.9 87.2 GSM328533 Populus x canescens root hypoxia_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
1.8 86.4 GSM327380 Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_1 GSE13990 Populus balsamifera developmental tissue series
1.8 86.4 GSM328567 Populus x canescens root hypoxia_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
1.8 86.4 GSM327409 Populus balsamifera_1006_root_midday_3 GSE13990 Populus balsamifera developmental tissue series
1.8 86.4 GSM328564 Populus x canescens root hypoxia_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At1g71350, orthologous to the query gene, PtpAffx.84152.1.A1_s_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
1.00 100.0 At1g71350 843476 eukaryotic translation initiation factor SUI1 family protein F:RNA binding, translation initiation factor activity;P:translational initiation;C:unknown;MFOPA O.I. H.G. S.X.
0.85 92.4 At3g03110 821074 XPO1B Encodes a member of the exportin family (XPO1B)which function as receptors for nuclear transport.Along with XPO1A involved in the development of male and female gametophytes. O.I. H.G. S.X.
0.70 83.5 At1g47570 841166 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;MOFPV O.I. H.G. S.X.
0.69 82.9 At2g39760 818561 BPM3 F:protein binding;P:biological_process unknown;C:unknown;MPOFV O.I. H.G. S.X.
0.67 81.6 At5g55300 835623 TOP1ALPHA (DNA TOPOISOMERASE I ALPHA) Encodes a type-I DNA topoisomerase I. Disruptions in this gene affect phyllotaxis and plant architecture suggesting that the gene plays a critical role in the maintenance of a regular pattern of organ initiation. Isolated as a protein oxidized during seed germination; proteomics approach revealed differences in de novo synthesis levels of this protein in condition with vs. without salicylic acid in the period from 0 to 40 hrs. following seed imbibition. O.I. H.G. S.X.
0.63 78.1 At5g65000 836624 nucleotide-sugar transporter family protein F:nucleotide-sugar transmembrane transporter activity, sugar:hydrogen symporter activity;P:carbohydrate transport, nucleotide-sugar transport;C:integral to membrane, Golgi membrane;MPOFAB O.I. H.G. S.X.
0.63 78.1 At5g49220 834982 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. H.G. S.X.
0.55 70.6 At3g24200 822006 FAD binding / monooxygenase/ oxidoreductase/ oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen F:oxidoreductase activity, monooxygenase activity, FAD binding, oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen;P:ubiquinone biosynthetic process, metabolic process;C:unknown;BOFMPA O.I. H.G. S.X.
0.55 70.6 At1g04790 839412 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFV O.I. H.G. S.X.
0.53 68.6 At1g04230 839575 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOPBV O.I. H.G. S.X.
0.51 66.3 At1g07210 837232 30S ribosomal protein S18 family F:structural constituent of ribosome;P:translation;C:ribosome, intracellular;BOPMF O.I. H.G. S.X.
0.46 59.8 At5g53440 835425 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cytosol;MOFBPVA O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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