CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID PtpAffx.84033.1.S1_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At4g12420: SKU5 (HF=2e-7)

Module size 6 genes

NF 0.53

%ile 83.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.73 93.6 0.94 PtpAffx.84033.1.S1_at CK103745 hypothetical protein - 2e-7 At4g12420 SKU5 O.I. H.G. S.X.
0.67 91.1 0.94 PtpAffx.205595.1.S1_at pmrna11048 hypothetical protein - 9e-5 At1g21326 VQ motif-containing protein O.I. H.G. S.X.
0.50 78.6 0.94 PtpAffx.30967.3.S1_at CX187005 hypothetical protein - 9e-11 At2g35710 glycogenin glucosyltransferase (glycogenin)-related O.I. H.G. S.X.
0.40 67.0 0.95 PtpAffx.52548.1.A1_at BU893688 arogenate/prephenate dehydratase - 2e-5 At5g22630 ADT5 (arogenate dehydratase 5) O.I. H.G. S.X.
0.38 63.7 0.94 Ptp.3099.1.S1_at CK092480 hypothetical protein - 5e-1 At1g26970 protein kinase, putative O.I. H.G. S.X.
0.33 57.5 0.95 Ptp.6999.1.S1_at CV272247 - - 7e+0 At4g30662 unknown protein O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.73	93.6	0.94	PtpAffx.84033.1.S1_at	CK103745	hypothetical protein	-	2e-7	At4g12420	SKU5	O.I.	H.G.	S.X.
0.67	91.1	0.94	PtpAffx.205595.1.S1_at	pmrna11048	hypothetical protein	-	9e-5	At1g21326	VQ motif-containing protein	O.I.	H.G.	S.X.
0.50	78.6	0.94	PtpAffx.30967.3.S1_at	CX187005	hypothetical protein	-	9e-11	At2g35710	glycogenin glucosyltransferase (glycogenin)-related	O.I.	H.G.	S.X.
0.40	67.0	0.95	PtpAffx.52548.1.A1_at	BU893688	arogenate/prephenate dehydratase	-	2e-5	At5g22630	ADT5 (arogenate dehydratase 5)	O.I.	H.G.	S.X.
0.38	63.7	0.94	Ptp.3099.1.S1_at	CK092480	hypothetical protein	-	5e-1	At1g26970	protein kinase, putative	O.I.	H.G.	S.X.
0.33	57.5	0.95	Ptp.6999.1.S1_at	CV272247	-	-	7e+0	At4g30662	unknown protein	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.6 97.2 GSM327660 Populus balsamifera_Male_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
4.2 95.6 GSM328533 Populus x canescens root hypoxia_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.9 95.1 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
3.5 94.3 GSM328484 Populus x canescens root hypoxia_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.7 91.8 GSM372095 Clone3200_LPI5_N-_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.5 90.9 GSM327407 Populus balsamifera_1006_root_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.5 90.9 GSM328564 Populus x canescens root hypoxia_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.4 90.4 GSM328567 Populus x canescens root hypoxia_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.3 89.8 GSM327659 Populus balsamifera_Male_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.3 89.8 GSM327404 Populus balsamifera_1006_young_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
5.6	97.2	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
4.2	95.6	GSM328533	Populus x canescens root hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.9	95.1	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.5	94.3	GSM328484	Populus x canescens root hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.7	91.8	GSM372095	Clone3200_LPI5_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.5	90.9	GSM327407	Populus balsamifera_1006_root_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.5	90.9	GSM328564	Populus x canescens root hypoxia_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.4	90.4	GSM328567	Populus x canescens root hypoxia_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.3	89.8	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At4g12420, orthologous to the query gene, PtpAffx.84033.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
1.00 100.0 At4g12420 826851 SKU5 Encodes a protein of unknown function involved in directed root tip growth. It is a member of 19-member gene family and is distantly related structurally to the multiple-copper oxidases ascorbate oxidase and laccase, though it lacks the copper-binding domains. The protein is glycosylated and GPI-anchored. It is localized to the plasma membrane and the cell wall. The gene is expressed most strongly in expanding tissues. O.I. H.G. S.X.
0.38 46.7 At3g62110 825384 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein F:polygalacturonase activity;P:response to cyclopentenone, carbohydrate metabolic process;C:vacuole;FPBOMAV O.I. H.G. S.X.
0.36 43.6 At5g16390 831500 CAC1 (CHLOROPLASTIC ACETYLCOENZYME A CARBOXYLASE 1) Encodes for the biotin carboxyl-carrier subunit of the multi-enzyme plastidial acetyl-coenzyme A carboxylase complex. O.I. H.G. S.X.
0.34 39.8 At1g79720 844311 aspartyl protease family protein F:aspartic-type endopeptidase activity;P:proteolysis;C:apoplast;PFMOB O.I. H.G. S.X.
0.33 38.1 At1g12500 837807 phosphate translocator-related F:organic anion transmembrane transporter activity;P:unknown;C:membrane;PMFOBA O.I. H.G. S.X.
0.30 32.1 At1g71020 843442 armadillo/beta-catenin repeat family protein / U-box domain-containing protein F:ubiquitin-protein ligase activity, binding;P:protein ubiquitination;C:ubiquitin ligase complex;PMOFBV O.I. H.G. S.X.
0.29 30.3 At1g01540 839533 protein kinase family protein F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA O.I. H.G. S.X.
0.29 30.3 At5g42100 834215 ATBG_PAP encodes a plasmodesmal (Pd)-associated membrane protein involved in plasmodesmal callose degradation, i.e. beta-1,3-glucanase (EC 3.2.1.39), and functions in the gating of Pd O.I. H.G. S.X.
0.29 30.3 At3g08600 820007 unknown protein F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;PB O.I. H.G. S.X.
0.28 30.3 At1g51570 841582 C2 domain-containing protein F:unknown;P:tryptophan biosynthetic process;C:endoplasmic reticulum, cell wall;MPOF O.I. H.G. S.X.
0.28 30.3 At2g27810 817328 xanthine/uracil permease family protein F:transmembrane transporter activity;P:transport;C:plasma membrane, membrane;BOMPFAV O.I. H.G. S.X.
0.27 26.2 At2g19940 816513 N-acetyl-gamma-glutamyl-phosphate reductase/ NAD or NADH binding / binding / catalytic/ oxidoreductase, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor / protein dimerization F:in 6 functions;P:amino acid metabolic process, response to cadmium ion;C:nucleolus, chloroplast stroma, chloroplast, membrane;BOAFP O.I. H.G. S.X.
0.27 26.2 At3g25860 822181 LTA2 Nuclear encoded dihydrolipoamide S-acetyltransferase (LTA2) that encodes teh Pyruvate Decarboxylase E2 subunit. Mutant has embryo defect. O.I. H.G. S.X.
0.26 24.4 At1g20090 838598 ROP2 (RHO-RELATED PROTEIN FROM PLANTS 2) Member of the Rho GTPase family. Functions to organize the microtubular cytoskeleton in combination with RIC1 and RIC4. These interactions affect pavement cell morphogenesis and pollen tube growth. ROP2 expression is stimulated by brassinosteroid treatment. Inhibit light-induced stomatal opening. O.I. H.G. S.X.
0.25 22.6 At2g33330 817896 PDLP3 (PLASMODESMATA-LOCATED PROTEIN 3) Encodes a plasmodesmal protein that affects the intercellular movement of molecules through the plasmodesmata. The protein has two DUF26 domains and a single transmembrane domain. O.I. H.G. S.X.
0.25 22.6 At3g59110 825080 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA O.I. H.G. S.X.
0.25 22.6 At3g57560 824923 aspartate/glutamate/uridylate kinase family protein encodes a N-acetylglutamate kinase, involved in arginine biosynthesis O.I. H.G. S.X.
0.25 22.6 At5g46290 834671 KAS I (3-KETOACYL-ACYL CARRIER PROTEIN SYNTHASE I) 3-ketoacyl-acyl carrier protein synthase I (KAS I) mRNA, O.I. H.G. S.X.
0.24 20.7 At5g18500 831968 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA O.I. H.G. S.X.
0.24 20.7 At4g39460 830101 SAMC1 (S-ADENOSYLMETHIONINE CARRIER 1) Encodes a plastid metabolite transporter required for the import of S-Adenosylmethionine from the cytosol. Impaired function of SAMT1 led to decreased accumulation of prenyllipids and mainly affected the chlorophyll pathway. O.I. H.G. S.X.
0.24 20.7 At5g04710 830349 aspartyl aminopeptidase, putative F:aminopeptidase activity, zinc ion binding;P:proteolysis;C:chloroplast, vacuole;BOFMPA O.I. H.G. S.X.
0.24 20.7 At5g35360 833497 CAC2 Encodes biotin carboxylase subunit (CAC2). O.I. H.G. S.X.
0.23 19.3 At5g55630 835657 ATKCO1 Encodes AtTPK1 (KCO1), a member of the Arabidopsis thaliana K+ channel family of AtTPK/KCO proteins. AtTPK1 is targeted to the vacuolar membrane. Forms homomeric ion channels in vivo. Voltage-independent and Ca2+-activated K+ channel. Activated by 14-3-3 proteins. O.I. H.G. S.X.
0.22 17.5 At3g60320 825203 DNA binding F:DNA binding;P:biological_process unknown;C:cellular_component unknown;OMPFBVA O.I. H.G. S.X.
0.22 17.5 At1g20330 838621 SMT2 (STEROL METHYLTRANSFERASE 2) Encodes a sterol-C24-methyltransferases involved in sterol biosynthesis. Mutants display altered sterol composition, serrated petals and sepals and altered cotyledon vascular patterning as well as ectopic endoreduplication. This suggests that suppression of endoreduplication is important for petal morphogenesis and that normal sterol composition is required for this suppression. O.I. H.G. S.X.
0.22 17.5 At5g19770 832097 TUA3 tubulin 3 O.I. H.G. S.X.
0.21 15.8 At5g10160 830880 beta-hydroxyacyl-ACP dehydratase, putative F:hydro-lyase activity, 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity;P:fatty acid biosynthetic process;C:cell wall, chloroplast, membrane;BOPM O.I. H.G. S.X.
0.21 15.8 At2g39080 818494 binding / catalytic F:binding, catalytic activity;P:metabolic process;C:chloroplast stroma, chloroplast;BOPA O.I. H.G. S.X.
0.21 15.8 At5g48630 834920 cyclin family protein F:cyclin-dependent protein kinase activity;P:regulation of cell cycle;C:unknown;MFPO O.I. H.G. S.X.
0.21 15.8 At4g33680 829510 AGD2 (ABERRANT GROWTH AND DEATH 2) Involved in disease resistance against Pseudomonas syringae. mutants have elevated SA levels, a low level of spontaneous cell death, callose deposition, and enlarged cells in leaves. genetically maps on chr 4 between L23H3 and nga1139. O.I. H.G. S.X.
0.21 15.8 At3g16240 820870 DELTA-TIP Delta tonoplast intrinsic protein, functions as a water channel and ammonium (NH3) transporter. Highly expressed in flower, shoot, and stem. Expression shows diurnal regulation and is induced by ammonium (NH3). Protein localized to vacuolar membrane. O.I. H.G. S.X.
0.21 15.8 At5g53860 835467 emb2737 (embryo defective 2737) F:unknown;P:embryonic development ending in seed dormancy;C:chloroplast;P O.I. H.G. S.X.
0.20 14.4 At2g25800 817122 - F:unknown;P:biological_process unknown;C:unknown;POMFB O.I. H.G. S.X.
0.19 12.7 At3g56130 824779 biotin/lipoyl attachment domain-containing protein F:binding;P:unknown;C:chloroplast;BOPAF O.I. H.G. S.X.
0.19 12.7 At4g18030 827528 dehydration-responsive family protein F:unknown;P:biological_process unknown;C:Golgi apparatus, plasma membrane, plant-type cell wall;PBO O.I. H.G. S.X.
0.19 12.7 At1g31420 840032 FEI1 (FEI 1) Encodes a plasma membrane localized leucine-rich repeat receptor kinase that is involved in cell wall elongation. Loss of function mutations of FEI1 and FEI2 exhibit defects in root and hypocotyl cell elongation. Double mutants are defective in cell wall biosynthesis and have thick hypocotyls, and short, thick roots. O.I. H.G. S.X.
0.19 12.7 At3g60620 825233 phosphatidate cytidylyltransferase family protein F:phosphatidate cytidylyltransferase activity, transferase activity, transferring phosphorus-containing groups;P:phospholipid biosynthetic process;C:chloroplast, membrane, chloroplast envelope;BOMFP O.I. H.G. S.X.
0.18 11.4 At1g47740 841185 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOFB O.I. H.G. S.X.
0.18 11.4 At4g35920 829747 MCA1 (mid1-complementing activity 1) Encodes an integral plasma membrane protein. Functionally complements the yeast mid1 mutant, a deficiency of Ca2+ influx. Involved in Ca2+ influx and mechanical sensing in roots. An over-expression line showed increased Ca2+ uptake than the wild type plant. The primary root of a knock-out mutant failed to penetrate a harder agar medium from a softer medium. O.I. H.G. S.X.
0.17 10.2 At5g04430 830322 BTR1L (BINDING TO TOMV RNA 1L (LONG FORM)) Gene model AT5G04430.1 produces active protein. (BTS1S). Binds to ToMV genomic RNA and prevents viral multiplication. O.I. H.G. S.X.
0.17 10.2 At2g45810 819189 DEAD/DEAH box helicase, putative F:helicase activity, ATP-dependent helicase activity, nucleic acid binding, ATP binding;P:unknown;C:cellular_component unknown;OMBFPAV O.I. H.G. S.X.
0.17 10.2 At1g11820 837730 catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PO O.I. H.G. S.X.
0.14 6.8 At2g20190 816539 CLASP (CLIP-ASSOCIATED PROTEIN) Encodes a microtubule-associated protein that is involved in both cell division and cell expansion. It likely promotes microtubule stability. O.I. H.G. S.X.
0.13 5.8 At4g30580 829181 ATS2 Encodes a plastidic lysophosphatidic acid acyltransferase (LPAAT). Is critical for chloroplasts phosphatidic acid biosynthesis. The null allele is embryo lethal. O.I. H.G. S.X.
0.13 5.8 At1g48520 841273 GATB (GLU-ADT SUBUNIT B) Encodes Glu-tRNA(Gln) amidotransferase subunit B (from Genbank record AF239836). O.I. H.G. S.X.
0.13 5.8 At1g02150 839577 pentatricopeptide (PPR) repeat-containing protein F:binding;P:unknown;C:chloroplast;POFMB O.I. H.G. S.X.
0.13 5.8 At1g27510 839642 - F:unknown;P:response to singlet oxygen;C:thylakoid membrane;PMOFB O.I. H.G. S.X.
0.13 5.8 At5g47780 834829 GAUT4 (Galacturonosyltransferase 4) Encodes a protein with putative galacturonosyltransferase activity. O.I. H.G. S.X.
0.12 4.9 At3g06060 819779 short-chain dehydrogenase/reductase (SDR) family protein F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:endomembrane system;BOMFPA O.I. H.G. S.X.
0.12 4.9 At2g30980 817649 ASKdZeta (Arabidopsis SHAGGY-related protein kinase dZeta) Encodes a GSK3-like protein kinase. This protein can interact with the BZR1 protein involved in brassinosteroid-mediated signaling in a Y2H assay and promotes BZR1 phosphorylation in protoplasts. O.I. H.G. S.X.
0.12 4.9 At4g18060 827531 clathrin binding F:clathrin binding;P:unknown;C:unknown;MOFPB O.I. H.G. S.X.
0.11 4.1 At3g14110 820628 FLU (FLUORESCENT IN BLUE LIGHT) Encodes a novel coiled-coil, TPR domain containing protein that is localized to the chloroplast membrane and is involved in chlorophyll biosynthesis. Mutants accumulate protochlorophyllide, an intermediate in the chlorophyll biosynthesis pathway, in dark and release singlet oxygen in plastids in a controlled and non-invasive manner upon a dark/light shift. O.I. H.G. S.X.
0.10 3.4 At1g14140 837973 mitochondrial substrate carrier family protein F:transporter activity, binding;P:transport, mitochondrial transport;C:mitochondrial inner membrane, membrane;MFPOV O.I. H.G. S.X.
0.10 3.4 At1g35510 840444 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. H.G. S.X.
0.09 2.8 At2g47940 819406 DEGP2 Encodes DegP2 protease (DEGP2); nuclear gene for chloroplast product. O.I. H.G. S.X.
0.08 2.3 At2g21170 816652 TIM (TRIOSEPHOSPHATE ISOMERASE) Encodes triosephosphate isomerase. O.I. H.G. S.X.

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	O.I.	H.G.	S.X.
1.00	100.0	At4g12420	826851	SKU5	Encodes a protein of unknown function involved in directed root tip growth. It is a member of 19-member gene family and is distantly related structurally to the multiple-copper oxidases ascorbate oxidase and laccase, though it lacks the copper-binding domains. The protein is glycosylated and GPI-anchored. It is localized to the plasma membrane and the cell wall. The gene is expressed most strongly in expanding tissues.	O.I.	H.G.	S.X.
0.38	46.7	At3g62110	825384	glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein	F:polygalacturonase activity;P:response to cyclopentenone, carbohydrate metabolic process;C:vacuole;FPBOMAV	O.I.	H.G.	S.X.
0.36	43.6	At5g16390	831500	CAC1 (CHLOROPLASTIC ACETYLCOENZYME A CARBOXYLASE 1)	Encodes for the biotin carboxyl-carrier subunit of the multi-enzyme plastidial acetyl-coenzyme A carboxylase complex.	O.I.	H.G.	S.X.
0.34	39.8	At1g79720	844311	aspartyl protease family protein	F:aspartic-type endopeptidase activity;P:proteolysis;C:apoplast;PFMOB	O.I.	H.G.	S.X.
0.33	38.1	At1g12500	837807	phosphate translocator-related	F:organic anion transmembrane transporter activity;P:unknown;C:membrane;PMFOBA	O.I.	H.G.	S.X.
0.30	32.1	At1g71020	843442	armadillo/beta-catenin repeat family protein / U-box domain-containing protein	F:ubiquitin-protein ligase activity, binding;P:protein ubiquitination;C:ubiquitin ligase complex;PMOFBV	O.I.	H.G.	S.X.
0.29	30.3	At1g01540	839533	protein kinase family protein	F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA	O.I.	H.G.	S.X.
0.29	30.3	At5g42100	834215	ATBG_PAP	encodes a plasmodesmal (Pd)-associated membrane protein involved in plasmodesmal callose degradation, i.e. beta-1,3-glucanase (EC 3.2.1.39), and functions in the gating of Pd	O.I.	H.G.	S.X.
0.29	30.3	At3g08600	820007	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;PB	O.I.	H.G.	S.X.
0.28	30.3	At1g51570	841582	C2 domain-containing protein	F:unknown;P:tryptophan biosynthetic process;C:endoplasmic reticulum, cell wall;MPOF	O.I.	H.G.	S.X.
0.28	30.3	At2g27810	817328	xanthine/uracil permease family protein	F:transmembrane transporter activity;P:transport;C:plasma membrane, membrane;BOMPFAV	O.I.	H.G.	S.X.
0.27	26.2	At2g19940	816513	N-acetyl-gamma-glutamyl-phosphate reductase/ NAD or NADH binding / binding / catalytic/ oxidoreductase, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor / protein dimerization	F:in 6 functions;P:amino acid metabolic process, response to cadmium ion;C:nucleolus, chloroplast stroma, chloroplast, membrane;BOAFP	O.I.	H.G.	S.X.
0.27	26.2	At3g25860	822181	LTA2	Nuclear encoded dihydrolipoamide S-acetyltransferase (LTA2) that encodes teh Pyruvate Decarboxylase E2 subunit. Mutant has embryo defect.	O.I.	H.G.	S.X.
0.26	24.4	At1g20090	838598	ROP2 (RHO-RELATED PROTEIN FROM PLANTS 2)	Member of the Rho GTPase family. Functions to organize the microtubular cytoskeleton in combination with RIC1 and RIC4. These interactions affect pavement cell morphogenesis and pollen tube growth. ROP2 expression is stimulated by brassinosteroid treatment. Inhibit light-induced stomatal opening.	O.I.	H.G.	S.X.
0.25	22.6	At2g33330	817896	PDLP3 (PLASMODESMATA-LOCATED PROTEIN 3)	Encodes a plasmodesmal protein that affects the intercellular movement of molecules through the plasmodesmata. The protein has two DUF26 domains and a single transmembrane domain.	O.I.	H.G.	S.X.
0.25	22.6	At3g59110	825080	protein kinase family protein	F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA	O.I.	H.G.	S.X.
0.25	22.6	At3g57560	824923	aspartate/glutamate/uridylate kinase family protein	encodes a N-acetylglutamate kinase, involved in arginine biosynthesis	O.I.	H.G.	S.X.
0.25	22.6	At5g46290	834671	KAS I (3-KETOACYL-ACYL CARRIER PROTEIN SYNTHASE I)	3-ketoacyl-acyl carrier protein synthase I (KAS I) mRNA,	O.I.	H.G.	S.X.
0.24	20.7	At5g18500	831968	protein kinase family protein	F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA	O.I.	H.G.	S.X.
0.24	20.7	At4g39460	830101	SAMC1 (S-ADENOSYLMETHIONINE CARRIER 1)	Encodes a plastid metabolite transporter required for the import of S-Adenosylmethionine from the cytosol. Impaired function of SAMT1 led to decreased accumulation of prenyllipids and mainly affected the chlorophyll pathway.	O.I.	H.G.	S.X.
0.24	20.7	At5g04710	830349	aspartyl aminopeptidase, putative	F:aminopeptidase activity, zinc ion binding;P:proteolysis;C:chloroplast, vacuole;BOFMPA	O.I.	H.G.	S.X.
0.24	20.7	At5g35360	833497	CAC2	Encodes biotin carboxylase subunit (CAC2).	O.I.	H.G.	S.X.
0.23	19.3	At5g55630	835657	ATKCO1	Encodes AtTPK1 (KCO1), a member of the Arabidopsis thaliana K+ channel family of AtTPK/KCO proteins. AtTPK1 is targeted to the vacuolar membrane. Forms homomeric ion channels in vivo. Voltage-independent and Ca2+-activated K+ channel. Activated by 14-3-3 proteins.	O.I.	H.G.	S.X.
0.22	17.5	At3g60320	825203	DNA binding	F:DNA binding;P:biological_process unknown;C:cellular_component unknown;OMPFBVA	O.I.	H.G.	S.X.
0.22	17.5	At1g20330	838621	SMT2 (STEROL METHYLTRANSFERASE 2)	Encodes a sterol-C24-methyltransferases involved in sterol biosynthesis. Mutants display altered sterol composition, serrated petals and sepals and altered cotyledon vascular patterning as well as ectopic endoreduplication. This suggests that suppression of endoreduplication is important for petal morphogenesis and that normal sterol composition is required for this suppression.	O.I.	H.G.	S.X.
0.22	17.5	At5g19770	832097	TUA3	tubulin 3	O.I.	H.G.	S.X.
0.21	15.8	At5g10160	830880	beta-hydroxyacyl-ACP dehydratase, putative	F:hydro-lyase activity, 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity;P:fatty acid biosynthetic process;C:cell wall, chloroplast, membrane;BOPM	O.I.	H.G.	S.X.
0.21	15.8	At2g39080	818494	binding / catalytic	F:binding, catalytic activity;P:metabolic process;C:chloroplast stroma, chloroplast;BOPA	O.I.	H.G.	S.X.
0.21	15.8	At5g48630	834920	cyclin family protein	F:cyclin-dependent protein kinase activity;P:regulation of cell cycle;C:unknown;MFPO	O.I.	H.G.	S.X.
0.21	15.8	At4g33680	829510	AGD2 (ABERRANT GROWTH AND DEATH 2)	Involved in disease resistance against Pseudomonas syringae. mutants have elevated SA levels, a low level of spontaneous cell death, callose deposition, and enlarged cells in leaves. genetically maps on chr 4 between L23H3 and nga1139.	O.I.	H.G.	S.X.
0.21	15.8	At3g16240	820870	DELTA-TIP	Delta tonoplast intrinsic protein, functions as a water channel and ammonium (NH3) transporter. Highly expressed in flower, shoot, and stem. Expression shows diurnal regulation and is induced by ammonium (NH3). Protein localized to vacuolar membrane.	O.I.	H.G.	S.X.
0.21	15.8	At5g53860	835467	emb2737 (embryo defective 2737)	F:unknown;P:embryonic development ending in seed dormancy;C:chloroplast;P	O.I.	H.G.	S.X.
0.20	14.4	At2g25800	817122	-	F:unknown;P:biological_process unknown;C:unknown;POMFB	O.I.	H.G.	S.X.
0.19	12.7	At3g56130	824779	biotin/lipoyl attachment domain-containing protein	F:binding;P:unknown;C:chloroplast;BOPAF	O.I.	H.G.	S.X.
0.19	12.7	At4g18030	827528	dehydration-responsive family protein	F:unknown;P:biological_process unknown;C:Golgi apparatus, plasma membrane, plant-type cell wall;PBO	O.I.	H.G.	S.X.
0.19	12.7	At1g31420	840032	FEI1 (FEI 1)	Encodes a plasma membrane localized leucine-rich repeat receptor kinase that is involved in cell wall elongation. Loss of function mutations of FEI1 and FEI2 exhibit defects in root and hypocotyl cell elongation. Double mutants are defective in cell wall biosynthesis and have thick hypocotyls, and short, thick roots.	O.I.	H.G.	S.X.
0.19	12.7	At3g60620	825233	phosphatidate cytidylyltransferase family protein	F:phosphatidate cytidylyltransferase activity, transferase activity, transferring phosphorus-containing groups;P:phospholipid biosynthetic process;C:chloroplast, membrane, chloroplast envelope;BOMFP	O.I.	H.G.	S.X.
0.18	11.4	At1g47740	841185	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOFB	O.I.	H.G.	S.X.
0.18	11.4	At4g35920	829747	MCA1 (mid1-complementing activity 1)	Encodes an integral plasma membrane protein. Functionally complements the yeast mid1 mutant, a deficiency of Ca2+ influx. Involved in Ca2+ influx and mechanical sensing in roots. An over-expression line showed increased Ca2+ uptake than the wild type plant. The primary root of a knock-out mutant failed to penetrate a harder agar medium from a softer medium.	O.I.	H.G.	S.X.
0.17	10.2	At5g04430	830322	BTR1L (BINDING TO TOMV RNA 1L (LONG FORM))	Gene model AT5G04430.1 produces active protein. (BTS1S). Binds to ToMV genomic RNA and prevents viral multiplication.	O.I.	H.G.	S.X.
0.17	10.2	At2g45810	819189	DEAD/DEAH box helicase, putative	F:helicase activity, ATP-dependent helicase activity, nucleic acid binding, ATP binding;P:unknown;C:cellular_component unknown;OMBFPAV	O.I.	H.G.	S.X.
0.17	10.2	At1g11820	837730	catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PO	O.I.	H.G.	S.X.
0.14	6.8	At2g20190	816539	CLASP (CLIP-ASSOCIATED PROTEIN)	Encodes a microtubule-associated protein that is involved in both cell division and cell expansion. It likely promotes microtubule stability.	O.I.	H.G.	S.X.
0.13	5.8	At4g30580	829181	ATS2	Encodes a plastidic lysophosphatidic acid acyltransferase (LPAAT). Is critical for chloroplasts phosphatidic acid biosynthesis. The null allele is embryo lethal.	O.I.	H.G.	S.X.
0.13	5.8	At1g48520	841273	GATB (GLU-ADT SUBUNIT B)	Encodes Glu-tRNA(Gln) amidotransferase subunit B (from Genbank record AF239836).	O.I.	H.G.	S.X.
0.13	5.8	At1g02150	839577	pentatricopeptide (PPR) repeat-containing protein	F:binding;P:unknown;C:chloroplast;POFMB	O.I.	H.G.	S.X.
0.13	5.8	At1g27510	839642	-	F:unknown;P:response to singlet oxygen;C:thylakoid membrane;PMOFB	O.I.	H.G.	S.X.
0.13	5.8	At5g47780	834829	GAUT4 (Galacturonosyltransferase 4)	Encodes a protein with putative galacturonosyltransferase activity.	O.I.	H.G.	S.X.
0.12	4.9	At3g06060	819779	short-chain dehydrogenase/reductase (SDR) family protein	F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:endomembrane system;BOMFPA	O.I.	H.G.	S.X.
0.12	4.9	At2g30980	817649	ASKdZeta (Arabidopsis SHAGGY-related protein kinase dZeta)	Encodes a GSK3-like protein kinase. This protein can interact with the BZR1 protein involved in brassinosteroid-mediated signaling in a Y2H assay and promotes BZR1 phosphorylation in protoplasts.	O.I.	H.G.	S.X.
0.12	4.9	At4g18060	827531	clathrin binding	F:clathrin binding;P:unknown;C:unknown;MOFPB	O.I.	H.G.	S.X.
0.11	4.1	At3g14110	820628	FLU (FLUORESCENT IN BLUE LIGHT)	Encodes a novel coiled-coil, TPR domain containing protein that is localized to the chloroplast membrane and is involved in chlorophyll biosynthesis. Mutants accumulate protochlorophyllide, an intermediate in the chlorophyll biosynthesis pathway, in dark and release singlet oxygen in plastids in a controlled and non-invasive manner upon a dark/light shift.	O.I.	H.G.	S.X.
0.10	3.4	At1g14140	837973	mitochondrial substrate carrier family protein	F:transporter activity, binding;P:transport, mitochondrial transport;C:mitochondrial inner membrane, membrane;MFPOV	O.I.	H.G.	S.X.
0.10	3.4	At1g35510	840444	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	O.I.	H.G.	S.X.
0.09	2.8	At2g47940	819406	DEGP2	Encodes DegP2 protease (DEGP2); nuclear gene for chloroplast product.	O.I.	H.G.	S.X.
0.08	2.3	At2g21170	816652	TIM (TRIOSEPHOSPHATE ISOMERASE)	Encodes triosephosphate isomerase.	O.I.	H.G.	S.X.

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Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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Gene ID	PtpAffx.84033.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At4g12420: SKU5 (HF=2e-7)
Module size	6 genes
NF	0.53
%ile	83.6

Co-expression analysis

Gene ID PtpAffx.84033.1.S1_at Gene name hypothetical protein Homology with ArabidopsisSimilar to At4g12420: SKU5 (HF=2e-7) Module size 6 genes NF 0.53 %ile 83.6

Co-expressed genes

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Specific experiments for the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Glycine_maxHordeum_vulgareOryza_sativaTriticum_aestivumVitis_viniferaZea_mays

Gene ID PtpAffx.84033.1.S1_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At4g12420: SKU5 (HF=2e-7)

Module size 6 genes

NF 0.53

%ile 83.6

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays