CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID PtpAffx.82338.1.A1_at

Gene name
Homology with Arabidopsis Similar to At1g33910: avirulence-responsive family protein / avirulence induced gene (AIG1) family protein (HF=9e-1)

Module size 30 genes

NF 0.12

%ile 23.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.94 99.6 0.76 PtpAffx.82338.1.A1_at CV250838 - - 9e-1 At1g33910 avirulence-responsive family protein / avirulence induced gene (AIG1) family protein O.I. H.G. S.X.
0.23 40.5 0.85 PtpAffx.849.5.A1_at CV270817 hypothetical protein - 2e-42 At3g23390 60S ribosomal protein L36a/L44 (RPL36aA) O.I. H.G. S.X.
0.22 38.3 0.90 PtpAffx.140892.2.A1_a_at CV241766 - - 3e-1 At5g64905 PROPEP3 (Elicitor peptide 3 precursor) O.I. H.G. S.X.
0.20 34.6 0.87 PtpAffx.69011.1.A1_at CV274046 - - 5e+0 At5g54740 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein O.I. H.G. S.X.
0.20 34.6 0.87 PtpAffx.217155.1.S1_at pmrna32306 hypothetical protein - 2e+1 At2g36030 unknown protein O.I. H.G. S.X.
0.16 26.9 0.86 PtpAffx.222153.1.S1_at pmrna39394 hypothetical protein - 3e-2 Atmg00030 - O.I. H.G. S.X.
0.15 25.3 0.87 Ptp.7803.1.S1_at DN499451 - - 1e+0 Atmg01150 - O.I. H.G. S.X.
0.14 23.5 0.85 PtpAffx.216214.1.S1_at pmrna30862 hypothetical protein - 5e+0 At5g02960 40S ribosomal protein S23 (RPS23B) O.I. H.G. S.X.
0.13 21.6 0.85 PtpAffx.131207.1.S1_at CK095473 - - 1e+0 At4g21020 late embryogenesis abundant domain-containing protein / LEA domain-containing protein O.I. H.G. S.X.
0.13 21.6 0.82 PtpAffx.31119.1.A1_at CV246886 hypothetical protein - 3e-1 At5g17360 - O.I. H.G. S.X.
0.11 18.1 0.86 PtpAffx.35466.1.S1_at DN490093 - - 3e-1 At3g14670 unknown protein O.I. H.G. S.X.
0.11 18.1 0.87 PtpAffx.210512.1.S1_at pmrna20618 hypothetical protein - 5e+0 At5g65070 MAF4 (MADS AFFECTING FLOWERING 4) O.I. H.G. S.X.
0.11 18.1 0.86 PtpAffx.61626.4.S1_at BP934563 - - 1e-21 At4g12110 SMO1-1 (STEROL-4ALPHA-METHYL OXIDASE 1-1) O.I. H.G. S.X.
0.10 16.3 0.85 PtpAffx.4666.1.A1_at CV281534 hypothetical protein - 6e+0 At4g02810 unknown protein O.I. H.G. S.X.
0.10 16.3 0.85 PtpAffx.225346.1.S1_at pmrna44632 hypothetical protein - 2e+0 At5g18690 AGP25 (ARABINOGALACTAN PROTEINS 25) O.I. H.G. S.X.
0.10 16.3 0.84 PtpAffx.80156.1.S1_at DN488849 - - 3e-1 At3g14160 oxidoreductase O.I. H.G. S.X.
0.10 16.3 0.83 PtpAffx.204554.1.S1_at pmrna8947 aquaporin, MIP family, PIP subfamily - 1e+0 At2g37180 RD28 (RESPONSIVE TO DESICCATION 28) O.I. H.G. S.X.
0.10 16.3 0.86 PtpAffx.224408.1.S1_at pmrna42907 hypothetical protein - 4e-2 At2g44110 MLO15 (MILDEW RESISTANCE LOCUS O 15) O.I. H.G. S.X.
0.10 16.3 0.87 PtpAffx.37661.1.A1_at CV243900 - - 1e+0 At1g18570 MYB51 (MYB DOMAIN PROTEIN 51) O.I. H.G. S.X.
0.09 14.6 0.81 PtpAffx.208565.1.S1_at pmrna16987 chromatin remodeling complex subunit - 5e-31 At2g28290 SYD (SPLAYED) O.I. H.G. S.X.
0.09 14.6 0.88 PtpAffx.139528.2.A1_at CV228130 - - 4e-10 At3g08570 protein binding / signal transducer O.I. H.G. S.X.
0.08 12.9 0.84 PtpAffx.66210.1.S1_at BU878186 - - 5e+0 At3g47480 calcium-binding EF hand family protein O.I. H.G. S.X.
0.08 12.9 0.83 PtpAffx.203704.1.S1_at pmrna7336 hypothetical protein - 9e-81 At4g05050 UBQ11 (UBIQUITIN 11) O.I. H.G. S.X.
0.08 12.9 0.84 PtpAffx.206287.1.S1_at pmrna12462 hypothetical protein - 2e-2 At3g49430 SRp34a (Ser/Arg-rich protein 34a) O.I. H.G. S.X.
0.07 11.6 0.87 PtpAffx.4385.2.S1_a_at CV254221 - - 1e+1 Atcg00050 - O.I. H.G. S.X.
0.07 11.6 0.84 PtpAffx.205280.1.S1_at pmrna10467 hypothetical protein - 2e-9 At3g12890 ASML2 (ACTIVATOR OF SPOMIN::LUC2) O.I. H.G. S.X.
0.06 9.8 0.84 PtpAffx.224733.1.S1_at pmrna43549 hypothetical protein - 9e-1 At2g18670 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.06 9.8 0.86 PtpAffx.2026.1.S1_at BI125606 - - 4e+0 At5g62060 F-box family protein O.I. H.G. S.X.
0.05 8.3 0.86 PtpAffx.102337.1.A1_at CV228911 - - 6e+0 At3g19184 DNA binding O.I. H.G. S.X.
0.05 8.3 0.83 PtpAffx.144775.1.S1_at BU879025 - - 2e+0 At1g48850 EMB1144 (embryo defective 1144) O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.94	99.6	0.76	PtpAffx.82338.1.A1_at	CV250838	-	-	9e-1	At1g33910	avirulence-responsive family protein / avirulence induced gene (AIG1) family protein	O.I.	H.G.	S.X.
0.23	40.5	0.85	PtpAffx.849.5.A1_at	CV270817	hypothetical protein	-	2e-42	At3g23390	60S ribosomal protein L36a/L44 (RPL36aA)	O.I.	H.G.	S.X.
0.22	38.3	0.90	PtpAffx.140892.2.A1_a_at	CV241766	-	-	3e-1	At5g64905	PROPEP3 (Elicitor peptide 3 precursor)	O.I.	H.G.	S.X.
0.20	34.6	0.87	PtpAffx.69011.1.A1_at	CV274046	-	-	5e+0	At5g54740	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	O.I.	H.G.	S.X.
0.20	34.6	0.87	PtpAffx.217155.1.S1_at	pmrna32306	hypothetical protein	-	2e+1	At2g36030	unknown protein	O.I.	H.G.	S.X.
0.16	26.9	0.86	PtpAffx.222153.1.S1_at	pmrna39394	hypothetical protein	-	3e-2	Atmg00030	-	O.I.	H.G.	S.X.
0.15	25.3	0.87	Ptp.7803.1.S1_at	DN499451	-	-	1e+0	Atmg01150	-	O.I.	H.G.	S.X.
0.14	23.5	0.85	PtpAffx.216214.1.S1_at	pmrna30862	hypothetical protein	-	5e+0	At5g02960	40S ribosomal protein S23 (RPS23B)	O.I.	H.G.	S.X.
0.13	21.6	0.85	PtpAffx.131207.1.S1_at	CK095473	-	-	1e+0	At4g21020	late embryogenesis abundant domain-containing protein / LEA domain-containing protein	O.I.	H.G.	S.X.
0.13	21.6	0.82	PtpAffx.31119.1.A1_at	CV246886	hypothetical protein	-	3e-1	At5g17360	-	O.I.	H.G.	S.X.
0.11	18.1	0.86	PtpAffx.35466.1.S1_at	DN490093	-	-	3e-1	At3g14670	unknown protein	O.I.	H.G.	S.X.
0.11	18.1	0.87	PtpAffx.210512.1.S1_at	pmrna20618	hypothetical protein	-	5e+0	At5g65070	MAF4 (MADS AFFECTING FLOWERING 4)	O.I.	H.G.	S.X.
0.11	18.1	0.86	PtpAffx.61626.4.S1_at	BP934563	-	-	1e-21	At4g12110	SMO1-1 (STEROL-4ALPHA-METHYL OXIDASE 1-1)	O.I.	H.G.	S.X.
0.10	16.3	0.85	PtpAffx.4666.1.A1_at	CV281534	hypothetical protein	-	6e+0	At4g02810	unknown protein	O.I.	H.G.	S.X.
0.10	16.3	0.85	PtpAffx.225346.1.S1_at	pmrna44632	hypothetical protein	-	2e+0	At5g18690	AGP25 (ARABINOGALACTAN PROTEINS 25)	O.I.	H.G.	S.X.
0.10	16.3	0.84	PtpAffx.80156.1.S1_at	DN488849	-	-	3e-1	At3g14160	oxidoreductase	O.I.	H.G.	S.X.
0.10	16.3	0.83	PtpAffx.204554.1.S1_at	pmrna8947	aquaporin, MIP family, PIP subfamily	-	1e+0	At2g37180	RD28 (RESPONSIVE TO DESICCATION 28)	O.I.	H.G.	S.X.
0.10	16.3	0.86	PtpAffx.224408.1.S1_at	pmrna42907	hypothetical protein	-	4e-2	At2g44110	MLO15 (MILDEW RESISTANCE LOCUS O 15)	O.I.	H.G.	S.X.
0.10	16.3	0.87	PtpAffx.37661.1.A1_at	CV243900	-	-	1e+0	At1g18570	MYB51 (MYB DOMAIN PROTEIN 51)	O.I.	H.G.	S.X.
0.09	14.6	0.81	PtpAffx.208565.1.S1_at	pmrna16987	chromatin remodeling complex subunit	-	5e-31	At2g28290	SYD (SPLAYED)	O.I.	H.G.	S.X.
0.09	14.6	0.88	PtpAffx.139528.2.A1_at	CV228130	-	-	4e-10	At3g08570	protein binding / signal transducer	O.I.	H.G.	S.X.
0.08	12.9	0.84	PtpAffx.66210.1.S1_at	BU878186	-	-	5e+0	At3g47480	calcium-binding EF hand family protein	O.I.	H.G.	S.X.
0.08	12.9	0.83	PtpAffx.203704.1.S1_at	pmrna7336	hypothetical protein	-	9e-81	At4g05050	UBQ11 (UBIQUITIN 11)	O.I.	H.G.	S.X.
0.08	12.9	0.84	PtpAffx.206287.1.S1_at	pmrna12462	hypothetical protein	-	2e-2	At3g49430	SRp34a (Ser/Arg-rich protein 34a)	O.I.	H.G.	S.X.
0.07	11.6	0.87	PtpAffx.4385.2.S1_a_at	CV254221	-	-	1e+1	Atcg00050	-	O.I.	H.G.	S.X.
0.07	11.6	0.84	PtpAffx.205280.1.S1_at	pmrna10467	hypothetical protein	-	2e-9	At3g12890	ASML2 (ACTIVATOR OF SPOMIN::LUC2)	O.I.	H.G.	S.X.
0.06	9.8	0.84	PtpAffx.224733.1.S1_at	pmrna43549	hypothetical protein	-	9e-1	At2g18670	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.
0.06	9.8	0.86	PtpAffx.2026.1.S1_at	BI125606	-	-	4e+0	At5g62060	F-box family protein	O.I.	H.G.	S.X.
0.05	8.3	0.86	PtpAffx.102337.1.A1_at	CV228911	-	-	6e+0	At3g19184	DNA binding	O.I.	H.G.	S.X.
0.05	8.3	0.83	PtpAffx.144775.1.S1_at	BU879025	-	-	2e+0	At1g48850	EMB1144 (embryo defective 1144)	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.5 94.3 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
3.3 93.7 GSM327408 Populus balsamifera_1006_root_midday_2 GSE13990 Populus balsamifera developmental tissue series
3.0 92.9 GSM327404 Populus balsamifera_1006_young_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.7 91.8 GSM327659 Populus balsamifera_Male_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.4 90.4 GSM362888 Clone1979_LPI5_N+_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.2 89.3 GSM327660 Populus balsamifera_Male_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.0 88.0 GSM327657 Populus balsamifera_Female_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.0 88.0 GSM372095 Clone3200_LPI5_N-_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.7 85.5 GSM328066 Populus x canescens leaf control_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
1.6 84.5 GSM327658 Populus balsamifera_Female_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
3.5	94.3	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.3	93.7	GSM327408	Populus balsamifera_1006_root_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.0	92.9	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.7	91.8	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.2	89.3	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.0	88.0	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.0	88.0	GSM372095	Clone3200_LPI5_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.7	85.5	GSM328066	Populus x canescens leaf control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.6	84.5	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage

Gene ID	PtpAffx.82338.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At1g33910: avirulence-responsive family protein / avirulence induced gene (AIG1) family protein (HF=9e-1)
Module size	30 genes
NF	0.12
%ile	23.4

Co-expression analysis

Gene ID PtpAffx.82338.1.A1_at Gene name Homology with ArabidopsisSimilar to At1g33910: avirulence-responsive family protein / avirulence induced gene (AIG1) family protein (HF=9e-1) Module size 30 genes NF 0.12 %ile 23.4

Co-expressed genes

Click More genes

Specific experiments for the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgareOryza_sativaTriticum_aestivumVitis_viniferaZea_mays

Gene ID PtpAffx.82338.1.A1_at

Gene name
Homology with Arabidopsis Similar to At1g33910: avirulence-responsive family protein / avirulence induced gene (AIG1) family protein (HF=9e-1)

Module size 30 genes

NF 0.12

%ile 23.4

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays