Co-expression analysis

Gene ID	PtpAffx.81779.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At4g03320: tic20-IV (TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS 20-IV) (HF=4e-1)
Module size	20 genes
NF	0.79
%ile	98.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.81	96.1	0.92	PtpAffx.81779.1.A1_at	CV273589	-	-	4e-1	At4g03320	tic20-IV (TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS 20-IV)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.91	99.2	0.95	PtpAffx.152340.1.S1_at	CN522546	hypothetical protein	-	1e-41	At5g07440	GDH2 (GLUTAMATE DEHYDROGENASE 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.90	97.9	0.96	PtpAffx.25648.2.A1_at	CV230643	hypothetical protein	-	6e-14	At4g02280	SUS3 (sucrose synthase 3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.88	97.7	0.94	PtpAffx.217585.1.S1_at	pmrna32914	hypothetical protein	-	4e-36	At5g57620	MYB36 (myb domain protein 36)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.87	97.5	0.95	PtpAffx.692.2.S2_at	CV274106	hypothetical protein	-	1e-7	At1g19397	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.85	97.2	0.96	PtpAffx.203638.1.S1_at	pmrna7218	hypothetical protein	-	3e-8	At5g19870	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.81	96.1	0.95	PtpAffx.88270.1.A1_at	CV274076	-	-	1e-1	At1g08080	ACA7 (ALPHA CARBONIC ANHYDRASE 7)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.81	96.1	0.94	PtpAffx.210801.1.S1_x_at	pmrna21209	hypothetical protein	-	4e+0	At5g05770	WOX7 (WUSCHEL-RELATED HOMEOBOX 7)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.79	95.3	0.92	PtpAffx.249.171.A1_at	CV275381	-	-	6e-2	At2g01150	RHA2B (RING-H2 FINGER PROTEIN 2B)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.79	95.3	0.95	PtpAffx.249.133.S1_a_at	CK320182	stress-induced hydrophobic peptide	-	5e-9	At3g05880	RCI2A (RARE-COLD-INDUCIBLE 2A)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.78	95.1	0.94	PtpAffx.202990.1.S1_at	pmrna5917	hypothetical protein	-	6e-4	At1g53940	GLIP2	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.78	95.1	0.96	PtpAffx.210801.1.S1_at	pmrna21209	hypothetical protein	-	4e+0	At5g05770	WOX7 (WUSCHEL-RELATED HOMEOBOX 7)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.78	95.1	0.94	PtpAffx.18976.1.A1_at	CV226921	hypothetical protein	-	1e+1	At5g20160	ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.77	94.9	0.95	PtpAffx.128798.1.S1_at	CN520667	hypothetical protein	-	2e-15	At5g41080	glycerophosphoryl diester phosphodiesterase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.72	92.7	0.94	PtpAffx.24159.1.A1_x_at	CA923426	hypothetical protein	-	9e-3	At1g70410	carbonic anhydrase, putative / carbonate dehydratase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.70	91.7	0.93	PtpAffx.24159.1.A1_at	CA923426	hypothetical protein	-	9e-3	At1g70410	carbonic anhydrase, putative / carbonate dehydratase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.69	91.5	0.93	PtpAffx.119396.1.A1_at	CV266382	hypothetical protein	-	1e+0	At3g49570	LSU3 (RESPONSE TO LOW SULFUR 3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.68	91.3	0.94	PtpAffx.6273.1.S1_at	CV264184	-	-	1e+1	At5g05910	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	0.95	PtpAffx.2386.3.S1_at	CV274142	hypothetical protein	-	2e+0	At4g03150	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.64	88.4	0.93	PtpAffx.127432.1.A1_at	CV257984	hypothetical protein	-	4e-4	At1g68725	AGP19 (ARABINOGALACTAN-PROTEIN 19)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
9.0	98.7	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
5.2	96.8	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
4.9	96.5	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.2	89.3	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM372095	Clone3200_LPI5_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.8	86.4	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.8	86.4	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
1.7	85.5	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.6	84.5	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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