Co-expression analysis

Gene ID	PtpAffx.81470.1.S1_s_at
Gene name	autoinhibited calcium ATPase
Homology with Arabidopsis	Similar to At3g21180: ACA9 (AUTOINHIBITED CA(2+)-ATPASE 9) (HF=1e-51)
Module size	6 genes
NF	0.04
%ile	8.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.59	84.9	0.91	PtpAffx.81470.1.S1_s_at	CV245113	autoinhibited calcium ATPase	-	1e-51	At3g21180	ACA9 (AUTOINHIBITED CA(2+)-ATPASE 9)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.20	34.6	0.93	PtpAffx.20115.1.S1_at	CK088504	-	-	2e-9	At2g20280	zinc finger (CCCH-type) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.08	12.9	0.91	Ptp.7357.1.S1_s_at	DN488961	hypothetical protein	-	7e-1	Atmg01130	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.02	3.6	0.93	Ptp.581.1.S1_s_at	DN484318	hypothetical protein	-	4e-7	At5g20150	SPX1 (SPX DOMAIN GENE 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.02	3.6	0.91	Ptp.4770.1.S1_at	BP936511	hypothetical protein	-	6e+0	At5g11412	nucleic acid binding / nucleotide binding	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.01	2.2	0.91	Ptp.2548.1.S1_s_at	BU812520	hypothetical protein	-	2e-16	At1g66260	RNA and export factor-binding protein, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.0	95.3	GSM327400	Populus balsamifera_20071015_Etiolated_seedling_6d_1	GSE13990	Populus balsamifera developmental tissue series
3.0	92.9	GSM327403	Populus balsamifera_20071015_Etiolated_seedling_6d_3	GSE13990	Populus balsamifera developmental tissue series
2.2	89.3	GSM328567	Populus x canescens root hypoxia_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.9	87.2	GSM327380	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_1	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM327402	Populus balsamifera_20071015_Etiolated_seedling_6d_2	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM328565	Populus x canescens root hypoxia_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.8	86.4	GSM328534	Populus x canescens root control_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.8	86.4	GSM328564	Populus x canescens root hypoxia_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.8	86.4	GSM244432	non infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
1.8	86.4	GSM327397	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_2	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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