Co-expression analysis

Gene ID	PtpAffx.811.1.S1_s_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At3g01680: unknown protein (HF=1e-9)
Module size	6 genes
NF	0.77
%ile	98.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.2	0.90	PtpAffx.811.1.S1_s_at	CK097682	hypothetical protein	-	1e-9	At3g01680	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.83	97.0	0.89	PtpAffx.811.1.S1_x_at	CK097682	hypothetical protein	-	1e-9	At3g01680	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.83	97.0	0.89	PtpAffx.811.1.S1_at	CK097682	hypothetical protein	-	1e-9	At3g01680	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.80	96.0	0.89	PtpAffx.943.1.A1_at	CV261187	hypothetical protein	-	1e-1	At2g30230	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.60	86.0	0.90	PtpAffx.109937.1.A1_at	CK097441	NAC domain protein, IPR003441	-	4e-1	At4g24700	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.42	68.6	0.89	Ptp.5480.1.S1_at	CV231040	-	-	5e-2	At2g43060	transcription factor	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.5	98.3	GSM327407	Populus balsamifera_1006_root_midday_1	GSE13990	Populus balsamifera developmental tissue series
6.0	97.5	GSM327408	Populus balsamifera_1006_root_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.8	94.9	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.3	93.7	GSM328062	Populus x canescens leaf control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.4	90.4	GSM327409	Populus balsamifera_1006_root_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM362885	Clone1979_LPI2_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.1	88.6	GSM328285	Populus x canescens root control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.1	88.6	GSM372096	Clone3200_LPI5_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.1	88.6	GSM328070	Populus x canescens leaf control_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.0	88.0	GSM372091	Clone3200_LPI2_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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