Co-expression analysis

Gene ID	PtpAffx.8047.1.A1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At2g36610: ATHB22 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 22) (HF=3e-2)
Module size	6 genes
NF	0.73
%ile	97.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.73	93.6	0.95	PtpAffx.8047.1.A1_at	CV265327	hypothetical protein	-	3e-2	At2g36610	ATHB22 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 22)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.77	94.9	0.96	Ptp.5933.1.S1_s_at	CA927010	tubulin, beta chain /// tubulin, beta chain	-	1e-165	At5g12250	TUB6 (BETA-6 TUBULIN)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	0.96	PtpAffx.891.1.S1_x_at	CV237339	tubulin, beta chain	-	2e-152	At5g62700	TUB3	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	0.96	PtpAffx.88948.1.S1_s_at	CV229329	hypothetical protein	-	5e-5	At1g52780	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.60	86.0	0.96	PtpAffx.41523.1.A1_at	CV266123	hypothetical protein	-	2e+0	At2g46420	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.55	82.2	0.96	PtpAffx.111722.1.S1_at	CF232509	nucleobase ascorbate transporter	-	4e-11	At4g38050	transmembrane transporter	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.3	95.8	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.3	93.7	GSM328560	Populus x canescens root control_rep_11	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.1	93.2	GSM328285	Populus x canescens root control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.9	92.5	GSM328277	Populus x canescens root control_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.8	92.1	GSM328557	Populus x canescens root control_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.7	91.8	GSM328559	Populus x canescens root control_rep_10	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.5	90.9	GSM328561	Populus x canescens root control_rep_12	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.5	90.9	GSM328534	Populus x canescens root control_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.4	90.4	GSM328558	Populus x canescens root control_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.3	89.8	GSM372095	Clone3200_LPI5_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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