Co-expression analysis

Gene ID PtpAffx.8047.1.A1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At2g36610: ATHB22 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 22) (HF=3e-2)
Module size 6 genes
NF 0.73
%ile 97.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7393.60.95PtpAffx.8047.1.A1_atCV265327hypothetical protein-3e-2At2g36610ATHB22 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 22)O.I.H.G.S.X.
0.7794.90.96Ptp.5933.1.S1_s_atCA927010tubulin, beta chain /// tubulin, beta chain-1e-165At5g12250TUB6 (BETA-6 TUBULIN)O.I.H.G.S.X.
0.6791.10.96PtpAffx.891.1.S1_x_atCV237339tubulin, beta chain-2e-152At5g62700TUB3O.I.H.G.S.X.
0.6791.10.96PtpAffx.88948.1.S1_s_atCV229329hypothetical protein-5e-5At1g52780unknown proteinO.I.H.G.S.X.
0.6086.00.96PtpAffx.41523.1.A1_atCV266123hypothetical protein-2e+0At2g46420unknown proteinO.I.H.G.S.X.
0.5582.20.96PtpAffx.111722.1.S1_atCF232509nucleobase ascorbate transporter-4e-11At4g38050transmembrane transporterO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.395.8GSM327412Populus balsamifera_1006_differentiating_xylem_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.393.7GSM328560Populus x canescens root control_rep_11GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.193.2GSM328285Populus x canescens root control_rep_04GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.992.5GSM328277Populus x canescens root control_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.892.1GSM328557Populus x canescens root control_rep_08GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.791.8GSM328559Populus x canescens root control_rep_10GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.590.9GSM328561Populus x canescens root control_rep_12GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.590.9GSM328534Populus x canescens root control_rep_07GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.490.4GSM328558Populus x canescens root control_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.389.8GSM372095Clone3200_LPI5_N-_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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