Co-expression analysis

Gene ID	PtpAffx.80257.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At5g52500: unknown protein (HF=8e-2)
Module size	6 genes
NF	0.41
%ile	69.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	91.1	0.95	PtpAffx.80257.1.S1_at	DN494706	hypothetical protein	-	8e-2	At5g52500	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	0.96	PtpAffx.221704.1.S1_s_at	pmrna38721	hypothetical protein	-	1e-8	At5g05570	transducin family protein / WD-40 repeat family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.55	82.2	0.95	PtpAffx.219980.1.S1_at	pmrna36190	hypothetical protein	-	2e-28	At4g17410	zinc ion binding	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.25	43.6	0.96	PtpAffx.200043.1.S1_x_at	pmrna74	hypothetical protein	-	1e-89	At3g58570	DEAD box RNA helicase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.23	40.5	0.96	PtpAffx.215528.1.S1_at	pmrna29780	hypothetical protein	-	3e-52	At1g28420	HB-1 (homeobox-1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.23	40.5	0.96	PtpAffx.74520.1.S1_s_at	CV275234	hypothetical protein	-	7e-57	At3g01090	AKIN10 (Arabidopsis SNF1 kinase homolog 10)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.4	90.4	GSM327409	Populus balsamifera_1006_root_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM328062	Populus x canescens leaf control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.2	89.3	GSM328070	Populus x canescens leaf control_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.2	89.3	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.1	88.6	GSM362887	Clone1979_LPI5_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.1	88.6	GSM372091	Clone3200_LPI2_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.0	88.0	GSM362886	Clone1979_LPI2_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.0	88.0	GSM372044	Clone1979_LPI5_N+_8w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.9	87.2	GSM328059	Populus x canescens leaf control_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.9	87.2	GSM362890	Clone1979_LPI5_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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