Co-expression analysis

Gene ID	PtpAffx.8017.1.S1_s_at
Gene name	NAC domain protein, IPR003441
Homology with Arabidopsis	Similar to At1g67025: - (HF=1e+0)
Module size	6 genes
NF	0.45
%ile	74.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.55	82.2	0.84	PtpAffx.8017.1.S1_s_at	CF229161	NAC domain protein, IPR003441	-	1e+0	At1g67025	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.60	86.0	0.90	PtpAffx.109937.1.A1_at	CK097441	NAC domain protein, IPR003441	-	4e-1	At4g24700	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.60	86.0	0.90	PtpAffx.811.1.S1_at	CK097682	hypothetical protein	-	1e-9	At3g01680	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.60	86.0	0.90	PtpAffx.811.1.S1_x_at	CK097682	hypothetical protein	-	1e-9	At3g01680	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.55	82.2	0.90	PtpAffx.811.1.S1_s_at	CK097682	hypothetical protein	-	1e-9	At3g01680	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.14	23.5	0.85	PtpAffx.213954.1.S1_at	pmrna27198	pho1-like protein	-	3e-13	At2g03260	EXS family protein / ERD1/XPR1/SYG1 family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.6	97.2	GSM327408	Populus balsamifera_1006_root_midday_2	GSE13990	Populus balsamifera developmental tissue series
5.0	96.6	GSM327407	Populus balsamifera_1006_root_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.6	94.5	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.3	93.7	GSM328105	Populus x canescens leaf hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.3	93.7	GSM334224	Populus balsamifera_1006_mature_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.8	92.1	GSM328066	Populus x canescens leaf control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.7	91.8	GSM328070	Populus x canescens leaf control_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.7	91.8	GSM328062	Populus x canescens leaf control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.1	88.6	GSM328284	Populus x canescens root control_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.9	87.2	GSM372096	Clone3200_LPI5_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200

Inter-species module comparison

A co-expression module including the barley gene, Contig18381_at, orthologous to the query gene, PtpAffx.8017.1.S1_s_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	Contig18381_at	At1g67025	-	-	7e-1	At4g01895	systemic acquired resistance (SAR) regulator protein NIMIN-1-related	O.I.	H.G.	S.X.	Please select
0.44	58.9	HM04F16u_at	At1g67025	-	-	1e+0	At5g07600	oleosin / glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.10	8.4	Contig18497_at	At1g67025	-	-	4e+0	At5g04070	short-chain dehydrogenase/reductase (SDR) family protein	O.I.	H.G.	S.X.	Please select
0.05	4.1	Contig1239_s_at	At1g67025	-	-	1e-15	At1g01620	PIP1C (PLASMA MEMBRANE INTRINSIC PROTEIN 1C)	O.I.	H.G.	S.X.	Please select
0.03	2.6	Contig19776_at	At1g67025	-	-	1e+0	At2g37600	60S ribosomal protein L36 (RPL36A)	O.I.	H.G.	S.X.	Please select
0.03	2.6	Contig15422_at	At1g67025	-	-	2e-1	At3g10585	myb family transcription factor / I-box binding factor-related protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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