Co-expression analysis

Gene ID	PtpAffx.7997.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At2g46830: CCA1 (CIRCADIAN CLOCK ASSOCIATED 1) (HF=2e-10)
Module size	6 genes
NF	0.58
%ile	88.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.2	0.90	PtpAffx.7997.1.S1_at	BU868664	hypothetical protein	-	2e-10	At2g46830	CCA1 (CIRCADIAN CLOCK ASSOCIATED 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.63	88.1	0.92	PtpAffx.92960.1.S1_at	AI161873	hypothetical protein	-	2e-2	At2g01660	PDLP6 (PLASMODESMATA-LOCATED PROTEIN 6)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.63	88.1	0.92	PtpAffx.161640.1.S1_at	CK106613	hypothetical protein	-	8e-2	At1g11980	RUB3 (UBIQUITIN-RELATED PROTEIN 3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.56	83.9	0.92	PtpAffx.154816.1.S1_at	CN522772	mtn21-like protein	-	5e-6	At5g19290	esterase/lipase/thioesterase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.38	63.7	0.92	PtpAffx.150917.1.S1_at	CK103462	hypothetical protein	-	1e-28	At5g63860	UVR8 (UVB-RESISTANCE 8)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.38	63.7	0.92	PtpAffx.65505.1.S1_at	CK106338	-	-	2e-8	At3g02580	STE1 (STEROL 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.2	98.5	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.5	90.9	GSM328059	Populus x canescens leaf control_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.5	90.9	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM372097	Clone3200_LPI5_N-_8w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.4	90.4	GSM328274	Populus x canescens leaf hypoxia_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.4	90.4	GSM327405	Populus balsamifera_1006_young_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM328275	Populus x canescens leaf hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.1	88.6	GSM362883	Clone1979_LPI2_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.0	88.0	GSM372098	Clone3200_LPI5_N-_8w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.0	88.0	GSM328077	Populus x canescens leaf control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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