CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID PtpAffx.79920.1.A1_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At5g59845: gibberellin-regulated family protein (HF=1e+0)

Module size 6 genes

NF 0.58

%ile 88.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.57 84.2 0.93 PtpAffx.79920.1.A1_at CK090376 hypothetical protein - 1e+0 At5g59845 gibberellin-regulated family protein O.I. H.G. S.X.
0.67 91.1 0.94 PtpAffx.90356.2.A1_a_at CV271797 hypothetical protein - 2e-15 At1g62850 - O.I. H.G. S.X.
0.60 86.0 0.93 Ptp.1002.1.A1_at CV241951 hypothetical protein - 2e+0 At1g23730 BCA3 (BETA CARBONIC ANHYDRASE 4) O.I. H.G. S.X.
0.50 78.6 0.95 PtpAffx.120762.1.A1_at CV262910 hypothetical protein - 6e-3 At2g42975 unknown protein O.I. H.G. S.X.
0.44 71.9 0.93 PtpAffx.22589.1.A1_at CV276606 hypothetical protein - 2e+0 At3g01230 unknown protein O.I. H.G. S.X.
0.36 61.6 0.93 Ptp.122.1.S1_at CK100070 - - 2e-39 At4g22200 AKT2/3 (ARABIDOPSIS POTASSIUM TRANSPORT 2/3) O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.55	82.2	0.90	PtpAffx.115235.1.A1_at	CV231524	hypothetical protein	-	7e-5	At1g63010	SPX (SYG1/Pho81/XPR1) domain-containing protein	O.I.	H.G.	S.X.
0.50	78.6	0.89	Ptp.1487.2.S1_at	CV283325	hypothetical protein	-	5e-7	At2g29670	binding	O.I.	H.G.	S.X.
0.50	78.6	0.92	Ptp.6148.1.S1_at	BU810548	-	-	8e-16	At5g16530	PIN5 (PIN-FORMED 5)	O.I.	H.G.	S.X.
0.50	78.6	0.93	Ptp.5291.1.S1_at	CN521303	-	-	2e-3	At1g72030	GCN5-related N-acetyltransferase (GNAT) family protein	O.I.	H.G.	S.X.
0.42	68.6	0.84	PtpAffx.204224.1.S1_x_at	pmrna8307	hypothetical protein	-	2e+0	At2g21650	MEE3 (MATERNAL EFFECT EMBRYO ARREST 3)	O.I.	H.G.	S.X.
0.40	67.0	0.90	PtpAffx.32849.1.S1_at	BU813715	cytochrome P450	-	5e-7	At4g19230	CYP707A1	O.I.	H.G.	S.X.
0.40	67.0	0.95	Ptp.943.1.A1_at	CK089617	hypothetical protein	-	1e+0	At1g26590	zinc finger (C2H2 type) family protein	O.I.	H.G.	S.X.
0.29	50.5	0.92	PtpAffx.131515.1.S1_at	CV241310	hypothetical protein	-	2e-9	At1g07010	calcineurin-like phosphoesterase family protein	O.I.	H.G.	S.X.
0.28	50.5	0.91	Ptp.484.1.S1_at	CX169919	hypothetical protein	-	6e-7	At5g50740	metal ion binding	O.I.	H.G.	S.X.
0.25	43.6	0.92	PtpAffx.7019.1.A1_s_at	DN484647	hypothetical protein	-	1e+0	At3g50890	AtHB28 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 28)	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.8 97.4 GSM328059 Populus x canescens leaf control_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.5 96.1 GSM328070 Populus x canescens leaf control_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.8 94.9 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
3.8 94.9 GSM362889 Clone1979_LPI5_N-_4w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.2 93.5 GSM328274 Populus x canescens leaf hypoxia_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.2 93.5 GSM327656 Populus balsamifera_Female_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
3.0 92.9 GSM328275 Populus x canescens leaf hypoxia_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.9 92.5 GSM328063 Populus x canescens leaf control_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.5 90.9 GSM327658 Populus balsamifera_Female_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
2.3 89.8 GSM327657 Populus balsamifera_Female_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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