Co-expression analysis

Gene ID	PtpAffx.79920.1.A1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At5g59845: gibberellin-regulated family protein (HF=1e+0)
Module size	6 genes
NF	0.58
%ile	88.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.57	84.2	0.93	PtpAffx.79920.1.A1_at	CK090376	hypothetical protein	-	1e+0	At5g59845	gibberellin-regulated family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	0.94	PtpAffx.90356.2.A1_a_at	CV271797	hypothetical protein	-	2e-15	At1g62850	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.60	86.0	0.93	Ptp.1002.1.A1_at	CV241951	hypothetical protein	-	2e+0	At1g23730	BCA3 (BETA CARBONIC ANHYDRASE 4)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.95	PtpAffx.120762.1.A1_at	CV262910	hypothetical protein	-	6e-3	At2g42975	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	0.93	PtpAffx.22589.1.A1_at	CV276606	hypothetical protein	-	2e+0	At3g01230	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	0.93	Ptp.122.1.S1_at	CK100070	-	-	2e-39	At4g22200	AKT2/3 (ARABIDOPSIS POTASSIUM TRANSPORT 2/3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.8	97.4	GSM328059	Populus x canescens leaf control_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.5	96.1	GSM328070	Populus x canescens leaf control_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.8	94.9	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.8	94.9	GSM362889	Clone1979_LPI5_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.2	93.5	GSM328274	Populus x canescens leaf hypoxia_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.2	93.5	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.0	92.9	GSM328275	Populus x canescens leaf hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.9	92.5	GSM328063	Populus x canescens leaf control_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.5	90.9	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

A co-expression module including the soybean gene, GmaAffx.23937.1.A1_at, orthologous to the query gene, PtpAffx.79920.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.6	GmaAffx.23937.1.A1_at	At5g59845	-	-	6e-2	At5g35620	LSP1 (LOSS OF SUSCEPTIBILITY TO POTYVIRUS 1)	O.I.	H.G.	S.X.	Please select
0.57	78.8	PsAffx.C201000011_at	At5g59845	-	-	3e-1	At2g45050	zinc finger (GATA type) family protein	O.I.	H.G.	S.X.	Please select
0.40	57.1	PsAffx.C122000010_at	At5g59845	-	-	6e-1	At4g16240	unknown protein	O.I.	H.G.	S.X.	Please select
0.08	11.0	HgAffx.17965.1.S1_at	At5g59845	-	-	2e+0	At2g23340	AP2 domain-containing transcription factor, putative	O.I.	H.G.	S.X.	Please select
0.04	7.0	Gma.2534.1.S1_s_at	At5g59845	Ubiquitin	-	2e-140	At4g05320	UBQ10 (POLYUBIQUITIN 10)	O.I.	H.G.	S.X.	Please select
0.01	3.4	GmaAffx.99.2.A1_s_at	At5g59845	Translationally controlled tumor-like protein	-	3e-1	At3g26670	-	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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