CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID PtpAffx.79920.1.A1_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At5g59845: gibberellin-regulated family protein (HF=1e+0)

Module size 6 genes

NF 0.58

%ile 88.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.57 84.2 0.93 PtpAffx.79920.1.A1_at CK090376 hypothetical protein - 1e+0 At5g59845 gibberellin-regulated family protein O.I. H.G. S.X.
0.67 91.1 0.94 PtpAffx.90356.2.A1_a_at CV271797 hypothetical protein - 2e-15 At1g62850 - O.I. H.G. S.X.
0.60 86.0 0.93 Ptp.1002.1.A1_at CV241951 hypothetical protein - 2e+0 At1g23730 BCA3 (BETA CARBONIC ANHYDRASE 4) O.I. H.G. S.X.
0.50 78.6 0.95 PtpAffx.120762.1.A1_at CV262910 hypothetical protein - 6e-3 At2g42975 unknown protein O.I. H.G. S.X.
0.44 71.9 0.93 PtpAffx.22589.1.A1_at CV276606 hypothetical protein - 2e+0 At3g01230 unknown protein O.I. H.G. S.X.
0.36 61.6 0.93 Ptp.122.1.S1_at CK100070 - - 2e-39 At4g22200 AKT2/3 (ARABIDOPSIS POTASSIUM TRANSPORT 2/3) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.8 97.4 GSM328059 Populus x canescens leaf control_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.5 96.1 GSM328070 Populus x canescens leaf control_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.8 94.9 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
3.8 94.9 GSM362889 Clone1979_LPI5_N-_4w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.2 93.5 GSM328274 Populus x canescens leaf hypoxia_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.2 93.5 GSM327656 Populus balsamifera_Female_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
3.0 92.9 GSM328275 Populus x canescens leaf hypoxia_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.9 92.5 GSM328063 Populus x canescens leaf control_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.5 90.9 GSM327658 Populus balsamifera_Female_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
2.3 89.8 GSM327657 Populus balsamifera_Female_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At5g59845, orthologous to the query gene, PtpAffx.79920.1.A1_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
0.51 66.3 At5g59845 836106 gibberellin-regulated family protein F:molecular_function unknown;P:response to gibberellin stimulus;C:endomembrane system;P O.I. H.G. S.X.
0.89 94.6 At2g23580 816890 MES4 (METHYL ESTERASE 4) Encodes a protein shown to have carboxylesterase activity and methyl salicylate esterase activity in vitro. This protein does not act on methyl IAA, methyl JA, MeGA4, or MEGA9 in vitro. O.I. H.G. S.X.
0.89 94.6 At5g60630 836184 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO O.I. H.G. S.X.
0.88 94.0 At1g20500 838638 4-coumarate-CoA ligase F:4-coumarate-CoA ligase activity;P:phenylpropanoid metabolic process, metabolic process;C:unknown;BOMFPAV O.I. H.G. S.X.
0.88 94.0 At3g14760 820704 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. H.G. S.X.
0.84 91.9 At2g23550 816887 MES6 (METHYL ESTERASE 6) Encodes a protein predicted to act as a carboxylesterase. It has similarity to the SABP2 methyl salicylate esterase from tobacco but no enzymatic activity has been identified for this protein. O.I. H.G. S.X.
0.82 90.9 At4g11180 826720 disease resistance-responsive family protein / dirigent family protein F:molecular_function unknown;P:lignan biosynthetic process, defense response;C:endomembrane system;P O.I. H.G. S.X.
0.74 86.1 At1g02590 839372 aldehyde oxidase, putative F:electron carrier activity, oxidoreductase activity, aldehyde oxidase activity;P:biological_process unknown;C:cellular_component unknown;MOBPF O.I. H.G. S.X.
0.73 85.5 At5g52500 835326 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.52 67.4 At1g23200 838928 pectinesterase family protein F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFAOM O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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