Co-expression analysis

Gene ID	PtpAffx.79842.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At3g43700: ATBPM6 (BTB-POZ and MATH domain 6) (HF=6e-9)
Module size	6 genes
NF	0.42
%ile	71.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.2	0.97	PtpAffx.79842.1.S1_at	BU884342	hypothetical protein	-	6e-9	At3g43700	ATBPM6 (BTB-POZ and MATH domain 6)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	0.97	PtpAffx.208634.1.S1_x_at	pmrna17136	hypothetical protein	-	8e-38	At3g26020	serine/threonine protein phosphatase 2A (PP2A) regulatory subunit B', putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.57	84.2	0.97	PtpAffx.39134.2.S1_s_at	BU818720	hypothetical protein	-	8e-23	At5g10270	CDKC	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.38	63.7	0.97	Ptp.5617.2.S1_a_at	CV281313	-	-	3e-19	At5g42190	ASK2 (ARABIDOPSIS SKP1-LIKE 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	0.97	PtpAffx.78955.1.S1_at	BU876794	hypothetical protein	-	6e-55	At4g24550	clathrin adaptor complexes medium subunit family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.20	34.6	0.97	PtpAffx.61544.1.A1_at	CA931045	hypothetical protein	-	4e-19	At3g59380	FTA (FARNESYLTRANSFERASE A)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.8	92.1	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM327407	Populus balsamifera_1006_root_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM327409	Populus balsamifera_1006_root_midday_3	GSE13990	Populus balsamifera developmental tissue series
1.8	86.4	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.7	85.5	GSM327408	Populus balsamifera_1006_root_midday_2	GSE13990	Populus balsamifera developmental tissue series
1.6	84.5	GSM327400	Populus balsamifera_20071015_Etiolated_seedling_6d_1	GSE13990	Populus balsamifera developmental tissue series
1.6	84.5	GSM328561	Populus x canescens root control_rep_12	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.5	83.5	GSM327398	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_3	GSE13990	Populus balsamifera developmental tissue series
1.5	83.5	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.5	83.5	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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