Co-expression analysis

Gene ID PtpAffx.79743.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At5g11260: HY5 (ELONGATED HYPOCOTYL 5) (HF=4e-38)
Module size 6 genes
NF 0.23
%ile 41.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8397.00.79PtpAffx.79743.1.S1_atCK095368hypothetical protein-4e-38At5g11260HY5 (ELONGATED HYPOCOTYL 5)O.I.H.G.S.X.
0.5582.20.81PtpAffx.9216.1.S1_atCK090745ABC transporter family protein /// ABC transporter family protein-3e-89At5g02270ATNAP9O.I.H.G.S.X.
0.3357.50.83PtpAffx.9216.2.S1_a_atCV257352ABC transporter family protein-2e-5At5g02270ATNAP9O.I.H.G.S.X.
0.2034.60.82PtpAffx.75758.2.A1_s_atCV234605ABC transporter family protein /// ABC transporter family protein-6e-62At1g03905ABC transporter family proteinO.I.H.G.S.X.
0.1932.70.83PtpAffx.214190.1.S1_atpmrna27608hypothetical protein-1e+1At5g03330OTU-like cysteine protease family proteinO.I.H.G.S.X.
0.058.30.82PtpAffx.213475.1.S1_atpmrna26347AP2 domain-containing transcription factor /// AP2 domain-containing transcription factor-7e-1At3g52440Dof-type zinc finger domain-containing proteinO.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.4471.90.90Ptp.2724.1.S1_s_atDN503650hypothetical protein-2e+0At3g06455splicing factor-relatedO.I.H.G.S.X.
0.4471.90.91PtpAffx.129726.1.S1_a_atCV263013hypothetical protein-2e-34At1g19140-O.I.H.G.S.X.
0.2441.80.71PtpAffx.214461.1.S1_atpmrna28120hydroxycinnamoyl CoA shikimate/quinate hydroxycinnamoyltransferase-1e-2At5g48930HCT (HYDROXYCINNAMOYL-COA SHIKIMATE/QUINATE HYDROXYCINNAMOYL TRANSFERASE)O.I.H.G.S.X.
0.1525.30.86PtpAffx.213476.1.S1_atpmrna26348AP2 domain-containing transcription factor-2e-29At2g28550RAP2.7 (RELATED TO AP2.7)O.I.H.G.S.X.
0.1525.30.78PtpAffx.213431.1.S1_x_atpmrna26262--5e-14At3g11580DNA-binding protein, putativeO.I.H.G.S.X.
0.1321.60.81PtpAffx.216589.1.S1_atpmrna31470hypothetical protein-2e-44At5g24850CRY3 (cryptochrome 3)O.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
12.999.3GSM327397Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
4.996.5GSM327398Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
4.796.3GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
4.596.1GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
4.095.3GSM327658Populus balsamifera_Female_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.393.7GSM327659Populus balsamifera_Male_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.293.5GSM327380Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.691.3GSM244431non infected tissue, biological rep2GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
2.490.4GSM327656Populus balsamifera_Female_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.389.8GSM136938Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucroseGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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