Co-expression analysis

Gene ID	PtpAffx.79743.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At5g11260: HY5 (ELONGATED HYPOCOTYL 5) (HF=4e-38)
Module size	6 genes
NF	0.23
%ile	41.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.83	97.0	0.79	PtpAffx.79743.1.S1_at	CK095368	hypothetical protein	-	4e-38	At5g11260	HY5 (ELONGATED HYPOCOTYL 5)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.55	82.2	0.81	PtpAffx.9216.1.S1_at	CK090745	ABC transporter family protein /// ABC transporter family protein	-	3e-89	At5g02270	ATNAP9	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	0.83	PtpAffx.9216.2.S1_a_at	CV257352	ABC transporter family protein	-	2e-5	At5g02270	ATNAP9	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.20	34.6	0.82	PtpAffx.75758.2.A1_s_at	CV234605	ABC transporter family protein /// ABC transporter family protein	-	6e-62	At1g03905	ABC transporter family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.19	32.7	0.83	PtpAffx.214190.1.S1_at	pmrna27608	hypothetical protein	-	1e+1	At5g03330	OTU-like cysteine protease family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.05	8.3	0.82	PtpAffx.213475.1.S1_at	pmrna26347	AP2 domain-containing transcription factor /// AP2 domain-containing transcription factor	-	7e-1	At3g52440	Dof-type zinc finger domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
12.9	99.3	GSM327397	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_2	GSE13990	Populus balsamifera developmental tissue series
4.9	96.5	GSM327398	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_3	GSE13990	Populus balsamifera developmental tissue series
4.7	96.3	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
4.5	96.1	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
4.0	95.3	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.3	93.7	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.2	93.5	GSM327380	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_1	GSE13990	Populus balsamifera developmental tissue series
2.6	91.3	GSM244431	non infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.4	90.4	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere

Inter-species module comparison

A co-expression module including the grape gene, 1609930_at, orthologous to the query gene, PtpAffx.79743.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.8	1609930_at	At5g11260	hypothetical LOC100243959	-	3e-24	At5g11260	HY5 (ELONGATED HYPOCOTYL 5)	O.I.	H.G.	S.X.	Please select
0.47	67.7	1622268_at	At5g11260	-	-	9e-16	At4g11110	SPA2 (SPA1-RELATED 2)	O.I.	H.G.	S.X.	Please select
0.20	22.4	1621150_at	At5g11260	hypothetical protein LOC100248338	-	1e-8	At5g39040	ATTAP2	O.I.	H.G.	S.X.	Please select
0.09	9.4	1607289_at	At5g11260	hypothetical protein LOC100243734	-	9e-2	At3g29020	MYB110 (myb domain protein 110)	O.I.	H.G.	S.X.	Please select
0.03	4.2	1619250_at	At5g11260	-	-	1e+0	At3g55280	RPL23AB (RIBOSOMAL PROTEIN L23AB)	O.I.	H.G.	S.X.	Please select
0.02	3.2	1609776_at	At5g11260	hypothetical protein LOC100252635	-	1e-19	At1g73875	endonuclease/exonuclease/phosphatase family protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Zea_mays

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