Co-expression analysis

Gene ID PtpAffx.79743.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At5g11260: HY5 (ELONGATED HYPOCOTYL 5) (HF=4e-38)
Module size 6 genes
NF 0.23
%ile 41.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8397.00.79PtpAffx.79743.1.S1_atCK095368hypothetical protein-4e-38At5g11260HY5 (ELONGATED HYPOCOTYL 5)O.I.H.G.S.X.
0.5582.20.81PtpAffx.9216.1.S1_atCK090745ABC transporter family protein /// ABC transporter family protein-3e-89At5g02270ATNAP9O.I.H.G.S.X.
0.3357.50.83PtpAffx.9216.2.S1_a_atCV257352ABC transporter family protein-2e-5At5g02270ATNAP9O.I.H.G.S.X.
0.2034.60.82PtpAffx.75758.2.A1_s_atCV234605ABC transporter family protein /// ABC transporter family protein-6e-62At1g03905ABC transporter family proteinO.I.H.G.S.X.
0.1932.70.83PtpAffx.214190.1.S1_atpmrna27608hypothetical protein-1e+1At5g03330OTU-like cysteine protease family proteinO.I.H.G.S.X. domain-containing transcription factor /// AP2 domain-containing transcription factor-7e-1At3g52440Dof-type zinc finger domain-containing proteinO.I.H.G.S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
12.999.3GSM327397Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
4.996.5GSM327398Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
4.796.3GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
4.596.1GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
4.095.3GSM327658Populus balsamifera_Female_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.393.7GSM327659Populus balsamifera_Male_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.293.5GSM327380Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.691.3GSM244431non infected tissue, biological rep2GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
2.490.4GSM327656Populus balsamifera_Female_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.389.8GSM136938Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucroseGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At5g11260, orthologous to the query gene, PtpAffx.79743.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.O.I.H.G.S.X.Other DB
0.3338.1At5g11260830996HY5 (ELONGATED HYPOCOTYL 5)Basic leucine zipper (bZIP) transcription factor. Nuclear localization. Involved in light-regulated transcriptional activation of G-box-containing promoters. Negatively regulated by Cop1. Although cytokinins do not appear to affect the gene's promoter activity, they appear to stabilize the protein. HY5 plays a role in anthocyanin accumulation in far-red light and blue light, but not in red light or in the dark. Mutant studies showed that the gene product is involved in the positive regulation of the PHYA-mediated inhibition of hypocotyl elongation. Binds to G- and Z-boxes, and other ACEs, but not to E-box. Loss of function mutation shows ABA resistant seedling phenotypes suggesting involvement for HY5 in mediating ABA responses. Binds to the promoter of ABI5 and regulates its expression.O.I.H.G.S.X.
0.3338.1At1g15100838073RHA2AEncodes a putative RING-H2 finger protein RHA2a.O.I.H.G.S.X.
0.3338.1At3g02910821189-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPBOAO.I.H.G.S.X.
0.2930.3At1g67030843022ZFP6 (ZINC FINGER PROTEIN 6)Encodes a zinc finger protein containing only a single zinc finger.O.I.H.G.S.X.
0.135.8At3g54990824664SMZ (SCHLAFMUTZE)Encodes a AP2 domain transcription factor that can repress flowering. SMZ and its paralogous gene, SNARCHZAPFEN (SNZ), share a signature with partial complementarity to the miR172 microRNA, whose precursor is induced upon flowering.O.I.H.G.S.X.
0.103.4At1g13670837928unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.

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