CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID PtpAffx.79594.1.S1_s_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At5g51970: sorbitol dehydrogenase, putative / L-iditol 2-dehydrogenase, putative (HF=2e-20)

Module size 6 genes

NF 0.45

%ile 74.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.63 88.1 0.93 PtpAffx.79594.1.S1_s_at CK098523 hypothetical protein - 2e-20 At5g51970 sorbitol dehydrogenase, putative / L-iditol 2-dehydrogenase, putative O.I. H.G. S.X.
0.50 78.6 0.93 Ptp.907.1.A1_at CV277484 hypothetical protein - 4e-32 At4g19160 unknown protein O.I. H.G. S.X.
0.50 78.6 0.94 PtpAffx.213643.1.S1_at pmrna26649 hypothetical protein - 1e-8 At5g61520 hexose transporter, putative O.I. H.G. S.X.
0.36 61.6 0.93 PtpAffx.16691.2.S1_a_at CV272539 hypothetical protein - 2e-8 At5g51970 sorbitol dehydrogenase, putative / L-iditol 2-dehydrogenase, putative O.I. H.G. S.X.
0.36 61.6 0.93 PtpAffx.211669.1.S1_x_at pmrna22876 hypothetical protein - 9e-6 At2g46940 unknown protein O.I. H.G. S.X.
0.21 36.5 0.94 PtpAffx.249.113.S1_at CV280925 hypothetical protein - 6e+0 At5g23140 NCLPP7 (NUCLEAR-ENCODED CLP PROTEASE P7) O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.50	78.6	0.95	Ptp.3337.1.S1_s_at	BU892645	hypothetical protein	-	3e-1	At5g56100	glycine-rich protein / oleosin	O.I.	H.G.	S.X.
0.44	71.9	0.92	PtpAffx.22186.1.A1_at	CV240396	-	-	2e+0	At3g13310	DNAJ heat shock N-terminal domain-containing protein	O.I.	H.G.	S.X.
0.36	61.6	0.89	PtpAffx.208580.1.S1_at	pmrna17019	hypothetical protein	-	2e-14	At5g46050	PTR3 (PEPTIDE TRANSPORTER 3)	O.I.	H.G.	S.X.
0.33	57.5	0.89	PtpAffx.21218.1.S1_at	CX185666	-	-	3e-35	At4g26140	BGAL12 (beta-galactosidase 12)	O.I.	H.G.	S.X.
0.33	57.5	0.91	PtpAffx.15690.1.S1_at	BP932573	proline transporter	-	2e+0	At3g60010	ASK13 (ARABIDOPSIS SKP1-LIKE 13)	O.I.	H.G.	S.X.
0.33	57.5	0.93	PtpAffx.204840.1.S1_at	pmrna9556	hypothetical protein	-	3e-32	At2g41900	zinc finger (CCCH-type) family protein	O.I.	H.G.	S.X.
0.32	55.2	0.91	PtpAffx.17581.1.A1_at	CV281948	GH3 family protein	-	4e-1	At2g46370	JAR1 (JASMONATE RESISTANT 1)	O.I.	H.G.	S.X.
0.31	53.7	0.92	PtpAffx.525.2.S1_at	CX179701	-	-	2e-123	At3g13750	BGAL1 (Beta galactosidase 1)	O.I.	H.G.	S.X.
0.30	52.0	0.85	PtpAffx.202168.1.S1_at	pmrna4336	hypothetical protein	-	3e-4	At2g45450	ZPR1 (LITTLE ZIPPER 1)	O.I.	H.G.	S.X.
0.29	50.5	0.92	PtpAffx.29534.1.S1_at	CV242097	proline transporter	-	2e+0	At3g58300	unknown protein	O.I.	H.G.	S.X.
0.27	47.1	0.89	Ptp.2230.1.S1_at	CV255359	hypothetical protein	-	7e-1	At3g03990	esterase/lipase/thioesterase family protein	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
11.5 99.2 GSM136938 Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
4.8 96.4 GSM327409 Populus balsamifera_1006_root_midday_3 GSE13990 Populus balsamifera developmental tissue series
4.6 96.2 GSM327408 Populus balsamifera_1006_root_midday_2 GSE13990 Populus balsamifera developmental tissue series
4.0 95.3 GSM327407 Populus balsamifera_1006_root_midday_1 GSE13990 Populus balsamifera developmental tissue series
3.0 92.9 GSM136936 Poplar in 1 x hrp + 0.25 % sucrose no bacteria GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.9 92.5 GSM334224 Populus balsamifera_1006_mature_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.7 91.8 GSM327398 Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_3 GSE13990 Populus balsamifera developmental tissue series
2.6 91.3 GSM327397 Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_2 GSE13990 Populus balsamifera developmental tissue series
2.3 89.8 GSM327657 Populus balsamifera_Female_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.2 89.3 GSM334226 Populus balsamifera_1006_mature_leaf_midday_3 GSE13990 Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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