Co-expression analysis

Gene ID	PtpAffx.79594.1.S1_s_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At5g51970: sorbitol dehydrogenase, putative / L-iditol 2-dehydrogenase, putative (HF=2e-20)
Module size	6 genes
NF	0.45
%ile	74.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.63	88.1	0.93	PtpAffx.79594.1.S1_s_at	CK098523	hypothetical protein	-	2e-20	At5g51970	sorbitol dehydrogenase, putative / L-iditol 2-dehydrogenase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.93	Ptp.907.1.A1_at	CV277484	hypothetical protein	-	4e-32	At4g19160	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.94	PtpAffx.213643.1.S1_at	pmrna26649	hypothetical protein	-	1e-8	At5g61520	hexose transporter, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	0.93	PtpAffx.16691.2.S1_a_at	CV272539	hypothetical protein	-	2e-8	At5g51970	sorbitol dehydrogenase, putative / L-iditol 2-dehydrogenase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	0.93	PtpAffx.211669.1.S1_x_at	pmrna22876	hypothetical protein	-	9e-6	At2g46940	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.21	36.5	0.94	PtpAffx.249.113.S1_at	CV280925	hypothetical protein	-	6e+0	At5g23140	NCLPP7 (NUCLEAR-ENCODED CLP PROTEASE P7)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
11.5	99.2	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
4.8	96.4	GSM327409	Populus balsamifera_1006_root_midday_3	GSE13990	Populus balsamifera developmental tissue series
4.6	96.2	GSM327408	Populus balsamifera_1006_root_midday_2	GSE13990	Populus balsamifera developmental tissue series
4.0	95.3	GSM327407	Populus balsamifera_1006_root_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.0	92.9	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.9	92.5	GSM334224	Populus balsamifera_1006_mature_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.7	91.8	GSM327398	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_3	GSE13990	Populus balsamifera developmental tissue series
2.6	91.3	GSM327397	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_2	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.2	89.3	GSM334226	Populus balsamifera_1006_mature_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

A co-expression module including the grape gene, 1612918_at, orthologous to the query gene, PtpAffx.79594.1.S1_s_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.65	85.0	1612918_at	At5g51970	L-idonate dehydrogenase	-	7e-21	At5g51970	sorbitol dehydrogenase, putative / L-iditol 2-dehydrogenase, putative	O.I.	H.G.	S.X.	Please select
0.52	73.9	1622262_at	At5g51970	hypothetical protein LOC100254362	-	2e-20	At5g56750	Ndr family protein	O.I.	H.G.	S.X.	Please select
0.49	69.3	1617659_at	At5g51970	hypothetical protein LOC100254085	-	3e-7	At2g42770	peroxisomal membrane 22 kDa family protein	O.I.	H.G.	S.X.	Please select
0.46	66.5	1609160_at	At5g51970	hypothetical protein LOC100257877	-	2e-28	At5g47110	lil3 protein, putative	O.I.	H.G.	S.X.	Please select
0.44	64.1	1613165_s_at	At5g51970	L-idonate dehydrogenase	-	8e-21	At5g51970	sorbitol dehydrogenase, putative / L-iditol 2-dehydrogenase, putative	O.I.	H.G.	S.X.	Please select
0.40	57.7	1620997_at	At5g51970	L-galactose dehydrogenase	-	2e-16	At4g33670	L-galactose dehydrogenase (L-GalDH)	O.I.	H.G.	S.X.	Please select
0.38	53.6	1610823_at	At5g51970	hypothetical protein LOC100255274	-	7e-6	At3g04760	pentatricopeptide (PPR) repeat-containing protein	O.I.	H.G.	S.X.	Please select
0.36	50.7	1615706_at	At5g51970	hypothetical protein LOC100257450	-	1e-4	At1g44920	unknown protein	O.I.	H.G.	S.X.	Please select
0.35	48.5	1613726_at	At5g51970	-	-	4e-13	At4g15110	CYP97B3	O.I.	H.G.	S.X.	Please select
0.34	46.8	1606882_at	At5g51970	hypothetical protein LOC100259086	-	5e-4	At1g45170	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	45.7	1620009_at	At5g51970	hypothetical protein LOC100250669	-	4e-100	At3g51820	G4	O.I.	H.G.	S.X.	Please select
0.32	43.1	1622619_at	At5g51970	hypothetical protein LOC100252967	-	4e-7	At3g60210	chloroplast chaperonin 10, putative	O.I.	H.G.	S.X.	Please select
0.28	37.7	1613691_s_at	At5g51970	hypothetical protein LOC100254533	-	5e-35	At2g05100	LHCB2.1	O.I.	H.G.	S.X.	Please select
0.27	34.0	1614898_at	At5g51970	hypothetical protein LOC100246217	-	4e-12	At1g08490	CPNIFS (CHLOROPLASTIC NIFS-LIKE CYSTEINE DESULFURASE)	O.I.	H.G.	S.X.	Please select
0.26	32.0	1618798_s_at	At5g51970	hypothetical protein LOC100243733	-	2e-20	At3g10670	ATNAP7	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Zea_mays

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