Co-expression analysis

Gene ID PtpAffx.79594.1.S1_s_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At5g51970: sorbitol dehydrogenase, putative / L-iditol 2-dehydrogenase, putative (HF=2e-20)
Module size 6 genes
NF 0.45
%ile 74.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6388.10.93PtpAffx.79594.1.S1_s_atCK098523hypothetical protein-2e-20At5g51970sorbitol dehydrogenase, putative / L-iditol 2-dehydrogenase, putativeO.I.H.G.S.X.
0.5078.60.93Ptp.907.1.A1_atCV277484hypothetical protein-4e-32At4g19160unknown proteinO.I.H.G.S.X.
0.5078.60.94PtpAffx.213643.1.S1_atpmrna26649hypothetical protein-1e-8At5g61520hexose transporter, putativeO.I.H.G.S.X.
0.3661.60.93PtpAffx.16691.2.S1_a_atCV272539hypothetical protein-2e-8At5g51970sorbitol dehydrogenase, putative / L-iditol 2-dehydrogenase, putativeO.I.H.G.S.X.
0.3661.60.93PtpAffx.211669.1.S1_x_atpmrna22876hypothetical protein-9e-6At2g46940unknown proteinO.I.H.G.S.X.
0.2136.50.94PtpAffx.249.113.S1_atCV280925hypothetical protein-6e+0At5g23140NCLPP7 (NUCLEAR-ENCODED CLP PROTEASE P7)O.I.H.G.S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
11.599.2GSM136938Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucroseGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
4.896.4GSM327409Populus balsamifera_1006_root_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
4.696.2GSM327408Populus balsamifera_1006_root_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
4.095.3GSM327407Populus balsamifera_1006_root_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.092.9GSM136936Poplar in 1 x hrp + 0.25 % sucrose no bacteriaGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
2.992.5GSM334224Populus balsamifera_1006_mature_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.791.8GSM327398Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.691.3GSM327397Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.389.8GSM327657Populus balsamifera_Female_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.289.3GSM334226Populus balsamifera_1006_mature_leaf_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At5g51970, orthologous to the query gene, PtpAffx.79594.1.S1_s_at

VF%ileGene IDRepr. IDGene NameFunc.O.I.H.G.S.X.Other DB
0.7989.1At5g51970835272sorbitol dehydrogenase, putative / L-iditol 2-dehydrogenase, putativeEncodes a putative sorbitol dehydrogenase that can be thiolated in vitro.O.I.H.G.S.X.
0.5065.3At1g63800842683UBC5 (ubiquitin-conjugating enzyme 5)F:ubiquitin-protein ligase activity;P:ubiquitin-dependent protein catabolic process;C:cellular_component unknown;MFOPVO.I.H.G.S.X.
0.4558.3At3g51840824347ACX4 (ACYL-COA OXIDASE 4)Encodes a short-chain acyl-CoA oxidase, which catalyzes the first step of peroxisomal fatty acid beta-oxidation during early, post-germinative growth in oilseed species. Null mutants virtually lack short-chain acyl-CoA and are resistant to 2,4-dichlorophenoxybutyric acid, which is converted to the herbicide and auxin analogue 2,4-dichlorophenoxyacetic acid by beta-oxidation. Despite the almost complete loss of short-chain activity, lipid catabolism and seedling growth and establishment was unaltered in the acx4 mutant. However, double mutants in acx3acx4 (acx3 encodes medium chain acyl CoA oxidase) were not viable and arrested during embryogenesis.O.I.H.G.S.X.
0.3948.4At5g59960836118unknown proteinF:molecular_function unknown;P:biological_process unknown;C:nucleus;POO.I.H.G.S.X.
0.3846.7At3g51730824336saposin B domain-containing proteinF:molecular_function unknown;P:lipid metabolic process;C:vacuole;MOPO.I.H.G.S.X.
0.3439.8At3g06380819812ATTLP9 (TUBBY-LIKE PROTEIN 9)Member of TLP familyO.I.H.G.S.X.
0.3439.8At5g47390834786myb family transcription factorF:transcription factor activity, DNA binding;P:in 8 processes;C:unknown;POFMO.I.H.G.S.X.
0.3235.7At5g58800835997quinone reductase family proteinF:oxidoreductase activity, FMN binding;P:negative regulation of transcription;C:plasma membrane;BOFPAMVO.I.H.G.S.X.
0.3032.1At5g10450830909GRF6 (G-box regulating factor 6)Encodes a member of the 14-3-3 gene family that is a lambda isoform (14-3-3λ). Interacts with APX3 (ascorbate peroxidase) and AKR2 , suggesting a role in mediating oxidative metabolism in stress response. This protein was shown to colocalize and interact with SERK1 by which it is phosphorylated. This protein is also reported to interact with the phosphorylated form of the BZR1 transcription factor involved in brassinosteroid signaling and may affect the nucleocytoplasmic shuttling of BZR1.O.I.H.G.S.X.
0.2830.3At5g19860832107unknown proteinF:unknown;P:biological_process unknown;C:vacuole;POO.I.H.G.S.X.
0.2522.6At2g21950816731SKIP6 (SKP1 interacting partner 6)Encodes an SKP1 interacting partner (SKIP6).O.I.H.G.S.X.
0.2319.3At2g26670817208TED4 (REVERSAL OF THE DET PHENOTYPE 4)Encodes a plastid heme oxygenase necessary for phytochrome chromophore biosynthesis and for coupling the expression of some nuclear genes to the functional state of the chloroplast.O.I.H.G.S.X.
0.2014.4At5g39590833955-F:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;MOPFO.I.H.G.S.X.
0.2014.4At2g45980819206unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.1811.4At4g02440828008EID1 (EMPFINDLICHER IM DUNKELROTEN LICHT 1)EID1 is an F-box protein that functions as a negative regulator in phytochrome A (phyA)-specific light signalling. Expressed at all stages of plant development independently of light conditions, localizes to the nucleus, and forms nuclear speckles under continuous far-red light. Forms stable dimeric and trimeric complexes with several ASK proteins and Cullin1 in yeast and in planta.O.I.H.G.S.X.
0.1811.4At4g18710827605BIN2 (BRASSINOSTEROID-INSENSITIVE 2)ATSK (shaggy-like kinase) family member that encodes an AtSK protein involved in the cross-talk between auxin and brassinosteroid signaling pathways. BR-INSENSITIVE 2 mutant indicated that the BR-insensitive dwarf phenotype was due to a semidominant mutation in the BIN2. BIN2 is not allelic to BRI1. BIN2-mediated phosphorylation appears to promote BZR1 export from the nucleus.O.I.H.G.S.X.
0.1811.4At5g10860830953CBS domain-containing proteinF:unknown;P:response to salt stress;C:mitochondrion;BOAPFMO.I.H.G.S.X.
0.1710.2At1g04400839529CRY2 (CRYPTOCHROME 2)Blue light receptor mediating blue-light regulated cotyledon expansion and flowering time. Positive regulator of the flowering-time gene CONSTANS. This gene possesses a light-induced CNT2 N-terminal homodimerisation domain.Involved in blue-light induced stomatal opening. Involved in triggering chromatin decondensation. An 80-residue motif (NC80) is sufficient to confer CRY2's physiological function. It is proposed that the PHR domain and the C-terminal tail of the unphosphorylated CRY2 form a "closed" conformation to suppress the NC80 motif in the absence of light. In response to blue light, the C-terminal tail of CRY2 is phosphorylated and electrostatically repelled from the surface of the PHR domain to form an "open" conformation, resulting in derepression of the NC80 motif and signal transduction to trigger photomorphogenic responses. Cry2 phosphorylation and degradation both occur in the nucleus.O.I.H.G.S.X.
0.1710.2At1g19000838481myb family transcription factorF:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:unknown;POO.I.H.G.S.X.
0.1710.2At5g05930830478guanylyl cyclase-related (GC1)F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOAO.I.H.G.S.X.
0.1710.2At5g65430836668GRF8 (GENERAL REGULATORY FACTOR 8)member of 14-3-3 proteins. This protein is reported to interact with the BZR1 transcription factor involved in brassinosteroid signaling and may affect the nucleocytoplasmic shuttling of BZR1O.I.H.G.S.X.
0.168.8At2g25070817045protein phosphatase 2C, putative / PP2C, putativeF:protein serine/threonine phosphatase activity, catalytic activity;P:protein amino acid dephosphorylation, N-terminal protein myristoylation;C:plasma membrane;MPOFBVAO.I.H.G.S.X.
0.157.8At3g26030822200ATB' DELTAprotein phosphatase 2A regulatory subunit isoform B' deltaO.I.H.G.S.X.
0.157.8At4g39100830065SHL1 (short life)Putative transcription factor containing a PHD finger and BAH motif, required for normal developmentO.I.H.G.S.X.
0.135.8At1g56200842073emb1303 (embryo defective 1303)F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:chloroplast;PMBOO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.

Back to the CoP portal site

Back to the KAGIANA project homepage