Co-expression analysis

Gene ID PtpAffx.79516.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At3g16720: ATL2 (HF=7e-16)
Module size 6 genes
NF 0.69
%ile 95.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6791.10.94PtpAffx.79516.1.S1_atAY780430.1--7e-16At3g16720ATL2O.I.H.G.S.X.
0.7794.90.94Ptp.3747.1.S1_s_atDN488219AP2/ERF domain-containing transcription factor-2e-1At5g43410ethylene-responsive factor, putativeO.I.H.G.S.X.
0.6791.10.93Ptp.866.1.S1_s_atCK093360AP2/ERF domain-containing transcription factor-6e-7At1g28160ethylene-responsive element-binding family proteinO.I.H.G.S.X.
0.6791.10.95Ptp.3335.1.S1_s_atBU815946--9e-1At5g27690heavy-metal-associated domain-containing proteinO.I.H.G.S.X.
0.5582.20.94Ptp.3082.1.S1_s_atCF232410hypothetical protein-6e-1At3g5954060S ribosomal protein L38 (RPL38B)O.I.H.G.S.X.
0.4673.70.94Ptp.6284.1.S1_atBU815355hypothetical protein-2e-13At5g58620zinc finger (CCCH-type) family proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.597.1GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
4.095.3GSM327659Populus balsamifera_Male_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.393.7GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.992.5GSM327656Populus balsamifera_Female_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.892.1GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.791.8GSM328483Populus x canescens root control_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.490.4GSM372042Clone1979_LPI5_N-_8w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.389.8GSM244440Mixed infected tissue, biological rep2GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
2.188.6GSM328558Populus x canescens root control_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.987.2GSM372092Clone3200_LPI2_N-_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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