CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID PtpAffx.79312.1.S1_at

Gene name
Homology with Arabidopsis Similar to At3g48880: F-box family protein (HF=1e+0)

Module size 17 genes

NF 0.14

%ile 27.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.94 99.6 0.88 PtpAffx.79312.1.S1_at CK097590 - - 1e+0 At3g48880 F-box family protein O.I. H.G. S.X.
0.35 59.7 0.93 PtpAffx.210729.1.S1_at pmrna21048 hypothetical protein - 1e-38 At2g45950 ASK20 (ARABIDOPSIS SKP1-LIKE 20) O.I. H.G. S.X.
0.31 53.7 0.95 PtpAffx.18981.2.S1_s_at CV241534 hypothetical protein - 7e-9 At5g41910 RNA polymerase II mediator complex protein-related O.I. H.G. S.X.
0.21 36.5 0.94 Ptp.1331.1.A1_at CV278242 hypothetical protein - 1e-23 At1g08530 unknown protein O.I. H.G. S.X.
0.19 32.7 0.95 Ptp.328.1.A1_at CK088363 jumonji domain protein - 1e+0 At3g56120 Met-10+ like family protein O.I. H.G. S.X.
0.18 30.8 0.96 PtpAffx.101313.1.A1_at CV269363 hypothetical protein - 6e+0 At4g07380 unknown protein O.I. H.G. S.X.
0.16 26.9 0.93 PtpAffx.109115.1.A1_at CV257141 hypothetical protein - 2e-3 At3g53940 mitochondrial substrate carrier family protein O.I. H.G. S.X.
0.16 26.9 0.93 PtpAffx.1250.3.A1_a_at CV256235 hypothetical protein - 3e-2 At5g52200 unknown protein O.I. H.G. S.X.
0.14 23.5 0.92 PtpAffx.214104.1.S1_x_at pmrna27456 hypothetical protein - 6e-18 At2g26280 CID7 O.I. H.G. S.X.
0.10 16.3 0.96 Ptp.4491.1.S1_at CV276525 hypothetical protein - 4e-32 At1g08110 lactoylglutathione lyase, putative / glyoxalase I, putative O.I. H.G. S.X.
0.10 16.3 0.96 PtpAffx.18054.1.A1_at CV263289 - - 1e-1 At5g64810 WRKY51 O.I. H.G. S.X.
0.10 16.3 0.94 PtpAffx.72685.2.A1_a_at CV233066 - - 2e-5 At3g29130 unknown protein O.I. H.G. S.X.
0.09 14.6 0.93 PtpAffx.249.199.A1_at CV259175 hypothetical protein - 3e-2 At4g26110 NAP1 O.I. H.G. S.X.
0.07 11.6 0.94 PtpAffx.147452.1.A1_at CV236841 hypothetical protein - 4e-10 At4g14145 unknown protein O.I. H.G. S.X.
0.07 11.6 0.94 PtpAffx.133900.1.A1_at CV264940 hypothetical protein - 1e-4 At2g46930 pectinacetylesterase, putative O.I. H.G. S.X.
0.06 9.8 0.94 PtpAffx.80616.1.A1_at BP933565 hypothetical protein - 4e+0 At4g11010 NDPK3 (NUCLEOSIDE DIPHOSPHATE KINASE 3) O.I. H.G. S.X.
0.05 8.3 0.92 PtpAffx.13778.1.S1_at CK091687 hypothetical protein - 4e-20 At1g17720 ATB BETA O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.0 92.9 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
2.9 92.5 GSM334225 Populus balsamifera_1006_mature_leaf_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.9 92.5 GSM327659 Populus balsamifera_Male_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.8 92.1 GSM334226 Populus balsamifera_1006_mature_leaf_midday_3 GSE13990 Populus balsamifera developmental tissue series
2.4 90.4 GSM327660 Populus balsamifera_Male_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.1 88.6 GSM328105 Populus x canescens leaf hypoxia_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.0 88.0 GSM328059 Populus x canescens leaf control_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.0 88.0 GSM328567 Populus x canescens root hypoxia_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.0 88.0 GSM327404 Populus balsamifera_1006_young_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.0 88.0 GSM328066 Populus x canescens leaf control_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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