Co-expression analysis

Gene ID	PtpAffx.79261.2.S1_at
Gene name
Homology with Arabidopsis	Similar to At3g19900: unknown protein (HF=2e-11)
Module size	6 genes
NF	0.12
%ile	23.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.83	97.0	0.90	PtpAffx.79261.2.S1_at	CV245540	-	-	2e-11	At3g19900	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.16	26.9	0.93	PtpAffx.209234.1.S1_at	pmrna18262	hypothetical protein	-	1e-37	At3g03305	calcineurin-like phosphoesterase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.12	19.6	0.92	PtpAffx.223283.1.S1_at	pmrna41201	hypothetical protein	-	2e-17	At5g49840	ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding / protein binding	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.09	14.6	0.92	PtpAffx.223109.1.S1_at	pmrna40935	hypothetical protein	-	7e-15	At1g74160	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.07	11.6	0.92	PtpAffx.121105.1.A1_at	CV254110	-	-	2e+0	At1g02740	chromatin binding	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.06	9.8	0.92	PtpAffx.52722.1.A1_at	CV268968	hypothetical protein	-	9e-50	At2g01110	APG2 (ALBINO AND PALE GREEN 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.5	98.3	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
6.7	97.9	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
4.6	96.2	GSM328105	Populus x canescens leaf hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.0	95.3	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.3	93.7	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.8	92.1	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.8	92.1	GSM328066	Populus x canescens leaf control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.6	91.3	GSM328062	Populus x canescens leaf control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.6	91.3	GSM327405	Populus balsamifera_1006_young_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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