Co-expression analysis

Gene ID	PtpAffx.78955.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At4g24550: clathrin adaptor complexes medium subunit family protein (HF=6e-55)
Module size	6 genes
NF	0.61
%ile	91.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	91.1	0.97	PtpAffx.78955.1.S1_at	BU876794	hypothetical protein	-	6e-55	At4g24550	clathrin adaptor complexes medium subunit family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.77	94.9	0.97	PtpAffx.42470.1.S1_s_at	CA822465	hypothetical protein	-	1e-14	At5g46630	clathrin adaptor complexes medium subunit family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.73	93.6	0.97	PtpAffx.144831.1.S1_s_at	DN500152	hypothetical protein	-	8e-74	At5g42080	ADL1 (ARABIDOPSIS DYNAMIN-LIKE PROTEIN)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.57	84.2	0.97	PtpAffx.17757.2.S1_s_at	BI138883	hypothetical protein	-	2e-33	At3g02420	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.97	PtpAffx.1066.10.S1_a_at	CX178751	hypothetical protein	-	2e-34	At5g05010	clathrin adaptor complexes medium subunit-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.38	63.7	0.98	PtpAffx.3847.4.A1_s_at	BU820394	hypothetical protein	-	2e-15	At1g13320	PP2AA3 (PROTEIN PHOSPHATASE 2A SUBUNIT A3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.8	94.9	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.2	93.5	GSM327403	Populus balsamifera_20071015_Etiolated_seedling_6d_3	GSE13990	Populus balsamifera developmental tissue series
3.1	93.2	GSM327400	Populus balsamifera_20071015_Etiolated_seedling_6d_1	GSE13990	Populus balsamifera developmental tissue series
3.1	93.2	GSM327402	Populus balsamifera_20071015_Etiolated_seedling_6d_2	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM328062	Populus x canescens leaf control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.3	89.8	GSM327406	Populus balsamifera_1006_young_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM327398	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_3	GSE13990	Populus balsamifera developmental tissue series
2.0	88.0	GSM328557	Populus x canescens root control_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.9	87.2	GSM328292	Populus x canescens root control_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.8	86.4	GSM327380	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_1	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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