Co-expression analysis

Gene ID	PtpAffx.77829.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At5g28020: CYSD2 (CYSTEINE SYNTHASE D2) (HF=7e-1)
Module size	11 genes
NF	0.11
%ile	22.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.80	96.0	0.86	PtpAffx.77829.1.A1_at	CK092005	-	-	7e-1	At5g28020	CYSD2 (CYSTEINE SYNTHASE D2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.56	83.9	0.89	Ptp.8079.1.S1_at	BU831247	-	-	9e-1	At3g18700	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.18	30.8	0.92	PtpAffx.8387.1.S1_at	BU886292	-	-	1e+0	At4g26701	DNA binding / DNA topoisomerase type I	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.17	29.1	0.91	Ptp.8052.1.S1_at	DN488391	hypothetical protein	-	7e-9	At1g76700	DNAJ heat shock N-terminal domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.17	29.1	0.93	PtpAffx.86629.1.S1_at	DN496610	hypothetical protein	-	5e-18	At1g16540	ABA3 (ABA DEFICIENT 3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.15	25.3	0.93	PtpAffx.138305.1.S1_at	DN503238	-	-	3e+0	At5g02120	OHP (ONE HELIX PROTEIN)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.09	14.6	0.89	PtpAffx.112311.1.S1_at	DN502958	-	-	8e-4	At2g23080	casein kinase II alpha chain, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.06	9.8	0.91	PtpAffx.132632.1.S1_at	CF232422	-	-	2e-2	At5g58390	peroxidase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.06	9.8	0.90	PtpAffx.105944.1.S1_at	AI165927	-	-	3e+0	At4g37010	caltractin, putative / centrin, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.06	9.8	0.91	PtpAffx.120676.1.S1_a_at	CV269763	-	-	8e-1	At4g34990	AtMYB32 (myb domain protein 32)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.06	9.8	0.88	PtpAffx.204349.1.S1_at	pmrna8551	hypothetical protein	-	3e+0	At5g48080	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.8	92.1	GSM328564	Populus x canescens root hypoxia_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.7	91.8	GSM328567	Populus x canescens root hypoxia_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.3	89.8	GSM328565	Populus x canescens root hypoxia_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.9	87.2	GSM328483	Populus x canescens root control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.8	86.4	GSM328562	Populus x canescens root hypoxia_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.7	85.5	GSM244437	Mmd infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
1.7	85.5	GSM327400	Populus balsamifera_20071015_Etiolated_seedling_6d_1	GSE13990	Populus balsamifera developmental tissue series
1.7	85.5	GSM328566	Populus x canescens root hypoxia_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.6	84.5	GSM244439	Mixed infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
1.6	84.5	GSM328285	Populus x canescens root control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage