Co-expression analysis

Gene ID PtpAffx.77318.2.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At3g12500: ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE) (HF=5e-4)
Module size 8 genes
NF 0.34
%ile 59.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.4369.70.89PtpAffx.77318.2.S1_atCX658035hypothetical protein-5e-4At3g12500ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE)O.I.H.G.S.X.
0.4875.40.91Ptp.4515.1.S1_s_atCV253179hypothetical protein-5e-79At5g47770FPS1 (FARNESYL DIPHOSPHATE SYNTHASE 1)O.I.H.G.S.X.
0.4673.70.92PtpAffx.211137.1.S1_atpmrna21879hypothetical protein-5e-8At3g03540NPC5 (NON-SPECIFIC PHOSPHOLIPASE C5)O.I.H.G.S.X.
0.4471.90.91PtpAffx.22865.1.S1_atDN484594hypothetical protein-3e-5At3g09020alpha 1,4-glycosyltransferase family protein / glycosyltransferase sugar-binding DXD motif-containing proteinO.I.H.G.S.X.
0.4067.00.93Ptp.4933.1.S1_atDN490851hypothetical protein-9e-19At3g11920glutaredoxin-relatedO.I.H.G.S.X.
0.2950.50.91PtpAffx.5423.1.S1_s_atCV229504hypothetical protein-3e-24At4g11820MVA1O.I.H.G.S.X.
0.2645.20.91PtpAffx.11966.1.A1_atCV245062hypothetical protein-1e-1At3g15760unknown proteinO.I.H.G.S.X.
0.1525.30.91Ptp.605.1.A1_atCK089297--2e+0At5g54150unknown proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.894.9GSM136938Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucroseGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
2.289.3GSM328564Populus x canescens root hypoxia_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.289.3GSM328105Populus x canescens leaf hypoxia_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.987.2GSM244437Mmd infected tissue, biological rep2GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
1.987.2GSM328565Populus x canescens root hypoxia_rep_07GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.987.2GSM328567Populus x canescens root hypoxia_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.987.2GSM244432non infected tissue, biological rep3GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
1.886.4GSM372042Clone1979_LPI5_N-_8w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
1.785.5GSM328077Populus x canescens leaf control_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.684.5GSM328284Populus x canescens root control_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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