Co-expression analysis

Gene ID PtpAffx.77318.1.S1_x_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At2g43570: chitinase, putative (HF=4e-2)
Module size 6 genes
NF 0.12
%ile 24.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5582.20.90PtpAffx.77318.1.S1_x_atCX658423hypothetical protein-4e-2At2g43570chitinase, putativeO.I.H.G.S.X.
0.6791.10.90PtpAffx.4462.1.S1_atCX185631hypothetical protein-3e-9At3g57260BGL2 (BETA-1,3-GLUCANASE 2)O.I.H.G.S.X.
0.5078.60.92PtpAffx.4462.1.S1_a_atCX185631hypothetical protein-3e-9At3g57260BGL2 (BETA-1,3-GLUCANASE 2)O.I.H.G.S.X.
0.5078.60.93PtpAffx.7639.1.A1_atBP935195hypothetical protein-3e+0At3g25130unknown proteinO.I.H.G.S.X.
0.069.80.89PtpAffx.14710.1.A1_a_atCV269309hypothetical protein-2e+0At3g62907unknown proteinO.I.H.G.S.X.
0.058.30.89PtpAffx.24353.1.A1_a_atCV274454hypothetical protein-3e-1At1g26250proline-rich extensin, putativeO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
8.198.5GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.894.9GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.092.9GSM372090Clone3200_LPI2_N+_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.992.5GSM328281Populus x canescens root control_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.389.8GSM327657Populus balsamifera_Female_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.389.8GSM328561Populus x canescens root control_rep_12GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.289.3GSM327405Populus balsamifera_1006_young_leaf_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.188.6GSM327658Populus balsamifera_Female_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.188.6GSM327659Populus balsamifera_Male_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.188.6GSM328483Populus x canescens root control_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO

Inter-species module comparison

A co-expression module including the wheat gene, Ta.1929.1.S1_at, orthologous to the query gene, PtpAffx.77318.1.S1_x_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.5072.4Ta.1929.1.S1_atAt2g43570--4e-5At2g43610glycoside hydrolase family 19 proteinO.I.H.G.S.X.
0.5072.4TaAffx.108248.1.S1_atAt2g43570--5e+0At5g10625-O.I.H.G.S.X.
0.5072.4Ta.12119.3.S1_atAt2g43570--8e-1At1g48610AT hook motif-containing proteinO.I.H.G.S.X.
0.4464.5Ta.4727.1.A1_atAt2g43570--9e+0At5g55650unknown proteinO.I.H.G.S.X.
0.4362.2TaAffx.12662.1.S1_atAt2g43570--1e+0At3g42800unknown proteinO.I.H.G.S.X.
0.1517.1TaAffx.599.1.A1_s_atAt2g43570--1e+0At4g12340-O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Vitis_vinifera
Zea_mays



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