Co-expression analysis

Gene ID	PtpAffx.77318.1.S1_x_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At2g43570: chitinase, putative (HF=4e-2)
Module size	6 genes
NF	0.12
%ile	24.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.55	82.2	0.90	PtpAffx.77318.1.S1_x_at	CX658423	hypothetical protein	-	4e-2	At2g43570	chitinase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	0.90	PtpAffx.4462.1.S1_at	CX185631	hypothetical protein	-	3e-9	At3g57260	BGL2 (BETA-1,3-GLUCANASE 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.92	PtpAffx.4462.1.S1_a_at	CX185631	hypothetical protein	-	3e-9	At3g57260	BGL2 (BETA-1,3-GLUCANASE 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.93	PtpAffx.7639.1.A1_at	BP935195	hypothetical protein	-	3e+0	At3g25130	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.06	9.8	0.89	PtpAffx.14710.1.A1_a_at	CV269309	hypothetical protein	-	2e+0	At3g62907	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.05	8.3	0.89	PtpAffx.24353.1.A1_a_at	CV274454	hypothetical protein	-	3e-1	At1g26250	proline-rich extensin, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.1	98.5	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.8	94.9	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.0	92.9	GSM372090	Clone3200_LPI2_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.9	92.5	GSM328281	Populus x canescens root control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.3	89.8	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM328561	Populus x canescens root control_rep_12	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.2	89.3	GSM327405	Populus balsamifera_1006_young_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM328483	Populus x canescens root control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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