Co-expression analysis

Gene ID	PtpAffx.76466.1.A1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At1g51440: lipase class 3 family protein (HF=5e-2)
Module size	34 genes
NF	0.15
%ile	29.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.96	99.8	0.86	PtpAffx.76466.1.A1_at	CV229438	hypothetical protein	-	5e-2	At1g51440	lipase class 3 family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	0.89	PtpAffx.13344.3.S1_s_at	BI122422	-	-	5e-6	At1g01720	ATAF1	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.26	45.2	0.93	PtpAffx.74520.2.S1_at	CN523492	hypothetical protein	-	8e-21	At3g01090	AKIN10 (Arabidopsis SNF1 kinase homolog 10)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.26	45.2	0.91	PtpAffx.212242.1.S1_at	pmrna24001	cationic amino acid transporter	-	1e-64	At3g03720	CAT4 (CATIONIC AMINO ACID TRANSPORTER 4)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.24	41.8	0.92	PtpAffx.211957.1.S1_at	pmrna23475	hypothetical protein	-	6e-37	At4g12770	heat shock protein binding	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.21	36.5	0.94	PtpAffx.17383.1.S1_s_at	CV283454	hypothetical protein	-	9e-59	At1g01820	PEX11C (PEROXIN 11C)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.20	34.6	0.94	PtpAffx.205626.1.S1_at	pmrna11117	hypothetical protein	-	1e-82	At1g71696	SOL1 (SUPPRESSOR OF LLP1 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.20	34.6	0.92	PtpAffx.36571.1.S1_s_at	CX172486	hypothetical protein	-	2e+0	At3g17930	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.20	34.6	0.93	PtpAffx.214193.1.S1_at	pmrna27615	hypothetical protein	-	8e-71	At2g25520	phosphate translocator-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.20	34.6	0.94	Ptp.3931.1.A1_a_at	BP936032	hypothetical protein	-	3e-33	At1g49040	SCD1 (STOMATAL CYTOKINESIS-DEFECTIVE 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.20	34.6	0.93	PtpAffx.125257.1.S1_at	CK099208	hypothetical protein	-	5e-6	At5g57060	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.19	32.7	0.91	PtpAffx.90084.1.S1_s_at	CX170622	-	-	1e+0	At5g57290	60S acidic ribosomal protein P3 (RPP3B)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.19	32.7	0.91	PtpAffx.65641.1.A1_at	CV273058	hypothetical protein	-	3e+0	At4g27020	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.19	32.7	0.95	Ptp.4864.1.S1_at	CV265988	hypothetical protein	-	3e-24	At5g47040	LON2 (LON PROTEASE 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.19	32.7	0.90	PtpAffx.200718.1.S1_at	pmrna1382	hypothetical protein	-	4e-12	At5g12430	DNAJ heat shock N-terminal domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.19	32.7	0.94	PtpAffx.220101.1.S1_x_at	pmrna36421	hypothetical protein	-	2e-85	At4g19040	EDR2	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.18	30.8	0.94	PtpAffx.211136.1.S1_s_at	pmrna21877	hypothetical protein	-	2e-27	At3g03560	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.18	30.8	0.94	PtpAffx.6289.1.A1_a_at	CV267715	-	-	1e-4	At1g74440	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.16	26.9	0.94	PtpAffx.207201.1.S1_at	pmrna14295	hypothetical protein	-	3e-5	At3g19780	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.16	26.9	0.96	PtpAffx.219972.1.S1_at	pmrna36173	hypothetical protein	-	1e-38	At5g47490	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.15	25.3	0.91	PtpAffx.141342.1.S1_at	CN520445	hypothetical protein	-	8e-37	At2g21520	transporter	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.15	25.3	0.94	PtpAffx.216377.1.S1_at	pmrna31119	hypothetical protein	-	8e-4	At3g59770	SAC9	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.14	23.5	0.92	PtpAffx.201263.1.S1_at	pmrna2504	hypothetical protein	-	4e-3	At5g55390	EDM2	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.14	23.5	0.95	PtpAffx.214289.1.S1_at	pmrna27792	hypothetical protein	-	3e-14	At4g31570	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.12	19.6	0.92	PtpAffx.216382.1.S1_at	pmrna31125	hypothetical protein	-	3e-7	At5g49960	binding / catalytic	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.11	18.1	0.92	PtpAffx.36802.2.S1_at	CV278493	hypothetical protein	-	1e-39	At3g17000	UBC32 (ubiquitin-conjugating enzyme 32)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.10	16.3	0.94	PtpAffx.214501.1.S1_at	pmrna28202	hypothetical protein	-	1e-11	At2g13100	glycerol-3-phosphate transporter, putative / glycerol 3-phosphate permease, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.10	16.3	0.93	Ptp.3354.1.A1_s_at	CV228819	hypothetical protein	-	6e-43	At5g26751	ATSK11	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.10	16.3	0.91	PtpAffx.24972.1.A1_s_at	CV239314	hypothetical protein	-	7e-9	At4g02680	EOL1 (ETO1-LIKE 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.10	16.3	0.92	PtpAffx.2338.1.A1_at	CV267067	hypothetical protein	-	2e-124	At1g71820	SEC6	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.09	14.6	0.89	PtpAffx.147021.1.A1_at	CV247530	hypothetical protein	-	6e-9	At4g24740	AFC2 (ARABIDOPSIS FUS3-COMPLEMENTING GENE 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.09	14.6	0.93	PtpAffx.109609.1.S1_at	CK114050	hypothetical protein	-	4e-4	At5g47790	forkhead-associated domain-containing protein / FHA domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.08	12.9	0.87	PtpAffx.68278.1.S1_s_at	CX653472	hypothetical protein	-	5e+0	At5g41990	WNK8 (WITH NO LYSINE (K) KINASE 8)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.05	8.3	0.92	Ptp.7972.2.S1_at	CV241553	hypothetical protein	-	9e-45	At5g50180	protein kinase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.0	92.9	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.9	92.5	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.0	88.0	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
1.7	85.5	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.7	85.5	GSM334224	Populus balsamifera_1006_mature_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.7	85.5	GSM362890	Clone1979_LPI5_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.6	84.5	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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