Co-expression analysis

Gene ID PtpAffx.7639.1.A1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At3g25130: unknown protein (HF=3e+0)
Module size 6 genes
NF 0.36
%ile 61.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.4673.70.90PtpAffx.7639.1.A1_atBP935195hypothetical protein-3e+0At3g25130unknown proteinO.I.H.G.S.X.
0.6086.00.90PtpAffx.4462.1.S1_atCX185631hypothetical protein-3e-9At3g57260BGL2 (BETA-1,3-GLUCANASE 2)O.I.H.G.S.X.
0.4471.90.91PtpAffx.249.47.A1_s_atCV256610--1e-3At4g11650ATOSM34 (osmotin 34)O.I.H.G.S.X.
0.3863.70.88PtpAffx.75787.1.A1_s_atCV268367AP2/ERF domain-containing transcription factor /// AP2/ERF domain-containing transcription factor-3e-1At3g07880Rho GDP-dissociation inhibitor family proteinO.I.H.G.S.X.
0.3661.60.90PtpAffx.77318.1.S1_x_atCX658423hypothetical protein-4e-2At2g43570chitinase, putativeO.I.H.G.S.X.
0.1219.60.91Ptp.4661.1.S1_s_atCV256788hypothetical protein-1e-19At5g54500FQR1 (FLAVODOXIN-LIKE QUINONE REDUCTASE 1)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.393.7GSM327409Populus balsamifera_1006_root_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.992.5GSM136938Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucroseGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
2.590.9GSM136936Poplar in 1 x hrp + 0.25 % sucrose no bacteriaGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
2.590.9GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.490.4GSM327405Populus balsamifera_1006_young_leaf_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.188.6GSM327402Populus balsamifera_20071015_Etiolated_seedling_6d_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.188.6GSM244437Mmd infected tissue, biological rep2GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
2.088.0GSM327406Populus balsamifera_1006_young_leaf_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.088.0GSM328281Populus x canescens root control_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.987.2GSM372090Clone3200_LPI2_N+_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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