CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID PtpAffx.75910.1.A1_at

Gene name
Homology with Arabidopsis Similar to At5g20860: pectinesterase family protein (HF=1e-8)

Module size 46 genes

NF 0.10

%ile 21.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.97 99.9 0.77 PtpAffx.75910.1.A1_at CV252708 - - 1e-8 At5g20860 pectinesterase family protein O.I. H.G. S.X.
0.26 45.2 0.91 PtpAffx.146785.1.A1_at CV264702 hypothetical protein - 3e+0 At5g58800 quinone reductase family protein O.I. H.G. S.X.
0.22 38.3 0.94 PtpAffx.206586.1.S1_at pmrna13061 hypothetical protein - 3e-23 At5g06220 - O.I. H.G. S.X.
0.21 36.5 0.83 PtpAffx.204535.1.S1_x_at pmrna8901 hypothetical protein - 1e-1 At2g28310 unknown protein O.I. H.G. S.X.
0.21 36.5 0.89 PtpAffx.223459.1.S1_at pmrna41483 - - 1e+0 At1g51300 acyl-protein thioesterase-related O.I. H.G. S.X.
0.21 36.5 0.93 Ptp.5103.1.S1_s_at BU874135 hypothetical protein - 2e-37 At4g01100 ADNT1 (ADENINE NUCLEOTIDE TRANSPORTER 1) O.I. H.G. S.X.
0.19 32.7 0.94 PtpAffx.12103.1.S1_at CV270711 hypothetical protein - 5e-46 At4g33630 EX1 (EXECUTER1) O.I. H.G. S.X.
0.17 29.1 0.92 PtpAffx.43263.1.A1_at CV244479 - - 3e-1 At3g05100 - O.I. H.G. S.X.
0.16 26.9 0.94 PtpAffx.216307.1.S1_x_at pmrna31000 hypothetical protein - 7e-16 At4g26500 CPSUFE (CHLOROPLAST SULFUR E) O.I. H.G. S.X.
0.16 26.9 0.90 PtpAffx.3125.1.A1_a_at CV257916 hypothetical protein - 1e-51 At1g65410 ATNAP11 (ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 11) O.I. H.G. S.X.
0.16 26.9 0.90 PtpAffx.9234.1.A1_s_at BI122577 hypothetical protein - 9e-3 At5g18140 DNAJ heat shock N-terminal domain-containing protein O.I. H.G. S.X.
0.15 25.3 0.95 PtpAffx.110312.1.S1_at CV278899 hypothetical protein - 1e-26 At5g61670 - O.I. H.G. S.X.
0.15 25.3 0.92 PtpAffx.5506.1.S1_at BU872766 hypothetical protein - 4e-5 At3g50690 leucine-rich repeat family protein O.I. H.G. S.X.
0.14 23.5 0.87 PtpAffx.12628.1.S1_at CV242138 hypothetical protein - 3e-55 At3g11050 ATFER2 (ferritin 2) O.I. H.G. S.X.
0.13 21.6 0.90 PtpAffx.218087.1.S1_x_at pmrna33610 hypothetical protein - 3e+0 At1g51220 zinc finger (C2H2 type) protein (WIP5) O.I. H.G. S.X.
0.13 21.6 0.94 PtpAffx.207482.1.S1_at pmrna14855 hypothetical protein - 3e-11 At1g51080 unknown protein O.I. H.G. S.X.
0.13 21.6 0.86 PtpAffx.121700.1.A1_at CV230167 - - 2e-2 At1g62510 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein O.I. H.G. S.X.
0.13 21.6 0.95 PtpAffx.148198.1.S1_at BI123172 hypothetical protein - 3e-4 At2g44870 unknown protein O.I. H.G. S.X.
0.13 21.6 0.94 PtpAffx.2019.1.S1_at CV234708 hypothetical protein - 2e-14 At2g14910 unknown protein O.I. H.G. S.X.
0.13 21.6 0.91 PtpAffx.200130.1.S1_at pmrna240 hypothetical protein - 6e-1 At1g68760 ATNUDX1 (ARABIDOPSIS THALIANA NUDIX HYDROLASE 1) O.I. H.G. S.X.
0.12 19.6 0.94 PtpAffx.13687.1.S1_at DN492122 high mobility group family - 4e-8 At3g51880 HMGB1 (HIGH MOBILITY GROUP B 1) O.I. H.G. S.X.
0.12 19.6 0.94 PtpAffx.29795.1.S1_s_at CV274983 - - 3e-33 At1g11930 alanine racemase family protein O.I. H.G. S.X.
0.11 18.1 0.89 PtpAffx.216240.1.S1_at pmrna30894 cytochrome P450 /// cytochrome P450 - 7e-2 At3g61880 CYP78A9 (CYTOCHROME P450 78A9) O.I. H.G. S.X.
0.11 18.1 0.90 PtpAffx.211821.1.S1_at pmrna23198 hypothetical protein - 9e-12 At1g30540 ATPase, BadF/BadG/BcrA/BcrD-type family O.I. H.G. S.X.
0.11 18.1 0.94 PtpAffx.211095.1.S1_at pmrna21794 hypothetical protein - 8e-109 At5g35220 EGY1 (ETHYLENE-DEPENDENT GRAVITROPISM-DEFICIENT AND YELLOW-GREEN 1) O.I. H.G. S.X.
0.11 18.1 0.93 PtpAffx.54493.1.S1_at DN500707 - - 2e-27 At3g13800 metallo-beta-lactamase family protein O.I. H.G. S.X.
0.10 16.3 0.91 PtpAffx.206593.1.S1_at pmrna13082 hypothetical protein - 2e-18 At3g11470 4'-phosphopantetheinyl transferase family protein O.I. H.G. S.X.
0.10 16.3 0.82 PtpAffx.140351.1.A1_at CV261123 - - 1e+1 At4g26210 mitochondrial ATP synthase g subunit family protein O.I. H.G. S.X.
0.10 16.3 0.92 PtpAffx.4426.1.A1_at CV276718 hypothetical protein - 2e-3 At3g28940 avirulence-responsive protein, putative / avirulence induced gene (AIG) protein, putative O.I. H.G. S.X.
0.10 16.3 0.84 PtpAffx.121553.1.A1_at CV235684 hypothetical protein - 1e+0 At5g24920 AtGDU5 (Arabidopsis thaliana GLUTAMINE DUMPER 5) O.I. H.G. S.X.
0.09 14.6 0.83 PtpAffx.215057.1.S1_s_at pmrna29014 hypothetical protein - 7e-1 At4g10790 UBX domain-containing protein O.I. H.G. S.X.
0.09 14.6 0.92 PtpAffx.4206.1.S1_at CV236414 hypothetical protein - 1e+1 At5g28850 calcium-binding EF hand family protein O.I. H.G. S.X.
0.09 14.6 0.90 PtpAffx.108288.1.A1_at CV246245 - - 2e-18 At4g14965 AtMAPR4 (Arabidopsis thaliana membrane-associated progesterone binding protein 4) O.I. H.G. S.X.
0.09 14.6 0.90 PtpAffx.204656.1.S1_x_at pmrna9158 hypothetical protein - 2e+0 At2g04790 unknown protein O.I. H.G. S.X.
0.08 12.9 0.87 PtpAffx.3460.3.S1_at CV272361 hypothetical protein - 3e-1 At3g51642 unknown protein O.I. H.G. S.X.
0.08 12.9 0.85 PtpAffx.60920.1.S1_at DN503375 - - 8e+0 Atmg00750 - O.I. H.G. S.X.
0.08 12.9 0.91 PtpAffx.143284.2.A1_at CV277212 hypothetical protein - 7e-3 At1g16880 uridylyltransferase-related O.I. H.G. S.X.
0.08 12.9 0.89 PtpAffx.212774.1.S1_at pmrna24999 hypothetical protein - 7e-10 At5g14750 ATMYB66 (MYB DOMAIN PROTEIN 66) O.I. H.G. S.X.
0.08 12.9 0.94 PtpAffx.3617.1.A1_a_at CV243405 - - 1e-7 At5g14260 SET domain-containing protein O.I. H.G. S.X.
0.07 11.6 0.94 PtpAffx.158450.1.S1_at DN487056 hypothetical protein - 4e-33 At5g06130 chaperone protein dnaJ-related O.I. H.G. S.X.
0.06 9.8 0.83 PtpAffx.126947.1.A1_at CV278424 hypothetical protein - 9e-8 At5g40380 protein kinase family protein O.I. H.G. S.X.
0.06 9.8 0.82 PtpAffx.213817.1.S1_at pmrna26967 white-brown-complex ABC transporter family - 6e-2 At5g63000 unknown protein O.I. H.G. S.X.
0.06 9.8 0.92 PtpAffx.200229.1.S1_x_at pmrna433 hypothetical protein - 3e-16 At1g27385 unknown protein O.I. H.G. S.X.
0.04 6.9 0.87 Ptp.1863.2.S1_at CK093716 hypothetical protein - 1e-16 At4g25630 FIB2 (FIBRILLARIN 2) O.I. H.G. S.X.
0.04 6.9 0.84 PtpAffx.95537.1.A1_at CV242380 hypothetical protein - 2e-12 At5g52180 unknown protein O.I. H.G. S.X.
0.04 6.9 0.82 PtpAffx.9989.1.S1_at CV267064 - - 2e-1 At4g27900 - O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.97	99.9	0.77	PtpAffx.75910.1.A1_at	CV252708	-	-	1e-8	At5g20860	pectinesterase family protein	O.I.	H.G.	S.X.
0.26	45.2	0.91	PtpAffx.146785.1.A1_at	CV264702	hypothetical protein	-	3e+0	At5g58800	quinone reductase family protein	O.I.	H.G.	S.X.
0.22	38.3	0.94	PtpAffx.206586.1.S1_at	pmrna13061	hypothetical protein	-	3e-23	At5g06220	-	O.I.	H.G.	S.X.
0.21	36.5	0.83	PtpAffx.204535.1.S1_x_at	pmrna8901	hypothetical protein	-	1e-1	At2g28310	unknown protein	O.I.	H.G.	S.X.
0.21	36.5	0.89	PtpAffx.223459.1.S1_at	pmrna41483	-	-	1e+0	At1g51300	acyl-protein thioesterase-related	O.I.	H.G.	S.X.
0.21	36.5	0.93	Ptp.5103.1.S1_s_at	BU874135	hypothetical protein	-	2e-37	At4g01100	ADNT1 (ADENINE NUCLEOTIDE TRANSPORTER 1)	O.I.	H.G.	S.X.
0.19	32.7	0.94	PtpAffx.12103.1.S1_at	CV270711	hypothetical protein	-	5e-46	At4g33630	EX1 (EXECUTER1)	O.I.	H.G.	S.X.
0.17	29.1	0.92	PtpAffx.43263.1.A1_at	CV244479	-	-	3e-1	At3g05100	-	O.I.	H.G.	S.X.
0.16	26.9	0.94	PtpAffx.216307.1.S1_x_at	pmrna31000	hypothetical protein	-	7e-16	At4g26500	CPSUFE (CHLOROPLAST SULFUR E)	O.I.	H.G.	S.X.
0.16	26.9	0.90	PtpAffx.3125.1.A1_a_at	CV257916	hypothetical protein	-	1e-51	At1g65410	ATNAP11 (ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 11)	O.I.	H.G.	S.X.
0.16	26.9	0.90	PtpAffx.9234.1.A1_s_at	BI122577	hypothetical protein	-	9e-3	At5g18140	DNAJ heat shock N-terminal domain-containing protein	O.I.	H.G.	S.X.
0.15	25.3	0.95	PtpAffx.110312.1.S1_at	CV278899	hypothetical protein	-	1e-26	At5g61670	-	O.I.	H.G.	S.X.
0.15	25.3	0.92	PtpAffx.5506.1.S1_at	BU872766	hypothetical protein	-	4e-5	At3g50690	leucine-rich repeat family protein	O.I.	H.G.	S.X.
0.14	23.5	0.87	PtpAffx.12628.1.S1_at	CV242138	hypothetical protein	-	3e-55	At3g11050	ATFER2 (ferritin 2)	O.I.	H.G.	S.X.
0.13	21.6	0.90	PtpAffx.218087.1.S1_x_at	pmrna33610	hypothetical protein	-	3e+0	At1g51220	zinc finger (C2H2 type) protein (WIP5)	O.I.	H.G.	S.X.
0.13	21.6	0.94	PtpAffx.207482.1.S1_at	pmrna14855	hypothetical protein	-	3e-11	At1g51080	unknown protein	O.I.	H.G.	S.X.
0.13	21.6	0.86	PtpAffx.121700.1.A1_at	CV230167	-	-	2e-2	At1g62510	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	O.I.	H.G.	S.X.
0.13	21.6	0.95	PtpAffx.148198.1.S1_at	BI123172	hypothetical protein	-	3e-4	At2g44870	unknown protein	O.I.	H.G.	S.X.
0.13	21.6	0.94	PtpAffx.2019.1.S1_at	CV234708	hypothetical protein	-	2e-14	At2g14910	unknown protein	O.I.	H.G.	S.X.
0.13	21.6	0.91	PtpAffx.200130.1.S1_at	pmrna240	hypothetical protein	-	6e-1	At1g68760	ATNUDX1 (ARABIDOPSIS THALIANA NUDIX HYDROLASE 1)	O.I.	H.G.	S.X.
0.12	19.6	0.94	PtpAffx.13687.1.S1_at	DN492122	high mobility group family	-	4e-8	At3g51880	HMGB1 (HIGH MOBILITY GROUP B 1)	O.I.	H.G.	S.X.
0.12	19.6	0.94	PtpAffx.29795.1.S1_s_at	CV274983	-	-	3e-33	At1g11930	alanine racemase family protein	O.I.	H.G.	S.X.
0.11	18.1	0.89	PtpAffx.216240.1.S1_at	pmrna30894	cytochrome P450 /// cytochrome P450	-	7e-2	At3g61880	CYP78A9 (CYTOCHROME P450 78A9)	O.I.	H.G.	S.X.
0.11	18.1	0.90	PtpAffx.211821.1.S1_at	pmrna23198	hypothetical protein	-	9e-12	At1g30540	ATPase, BadF/BadG/BcrA/BcrD-type family	O.I.	H.G.	S.X.
0.11	18.1	0.94	PtpAffx.211095.1.S1_at	pmrna21794	hypothetical protein	-	8e-109	At5g35220	EGY1 (ETHYLENE-DEPENDENT GRAVITROPISM-DEFICIENT AND YELLOW-GREEN 1)	O.I.	H.G.	S.X.
0.11	18.1	0.93	PtpAffx.54493.1.S1_at	DN500707	-	-	2e-27	At3g13800	metallo-beta-lactamase family protein	O.I.	H.G.	S.X.
0.10	16.3	0.91	PtpAffx.206593.1.S1_at	pmrna13082	hypothetical protein	-	2e-18	At3g11470	4'-phosphopantetheinyl transferase family protein	O.I.	H.G.	S.X.
0.10	16.3	0.82	PtpAffx.140351.1.A1_at	CV261123	-	-	1e+1	At4g26210	mitochondrial ATP synthase g subunit family protein	O.I.	H.G.	S.X.
0.10	16.3	0.92	PtpAffx.4426.1.A1_at	CV276718	hypothetical protein	-	2e-3	At3g28940	avirulence-responsive protein, putative / avirulence induced gene (AIG) protein, putative	O.I.	H.G.	S.X.
0.10	16.3	0.84	PtpAffx.121553.1.A1_at	CV235684	hypothetical protein	-	1e+0	At5g24920	AtGDU5 (Arabidopsis thaliana GLUTAMINE DUMPER 5)	O.I.	H.G.	S.X.
0.09	14.6	0.83	PtpAffx.215057.1.S1_s_at	pmrna29014	hypothetical protein	-	7e-1	At4g10790	UBX domain-containing protein	O.I.	H.G.	S.X.
0.09	14.6	0.92	PtpAffx.4206.1.S1_at	CV236414	hypothetical protein	-	1e+1	At5g28850	calcium-binding EF hand family protein	O.I.	H.G.	S.X.
0.09	14.6	0.90	PtpAffx.108288.1.A1_at	CV246245	-	-	2e-18	At4g14965	AtMAPR4 (Arabidopsis thaliana membrane-associated progesterone binding protein 4)	O.I.	H.G.	S.X.
0.09	14.6	0.90	PtpAffx.204656.1.S1_x_at	pmrna9158	hypothetical protein	-	2e+0	At2g04790	unknown protein	O.I.	H.G.	S.X.
0.08	12.9	0.87	PtpAffx.3460.3.S1_at	CV272361	hypothetical protein	-	3e-1	At3g51642	unknown protein	O.I.	H.G.	S.X.
0.08	12.9	0.85	PtpAffx.60920.1.S1_at	DN503375	-	-	8e+0	Atmg00750	-	O.I.	H.G.	S.X.
0.08	12.9	0.91	PtpAffx.143284.2.A1_at	CV277212	hypothetical protein	-	7e-3	At1g16880	uridylyltransferase-related	O.I.	H.G.	S.X.
0.08	12.9	0.89	PtpAffx.212774.1.S1_at	pmrna24999	hypothetical protein	-	7e-10	At5g14750	ATMYB66 (MYB DOMAIN PROTEIN 66)	O.I.	H.G.	S.X.
0.08	12.9	0.94	PtpAffx.3617.1.A1_a_at	CV243405	-	-	1e-7	At5g14260	SET domain-containing protein	O.I.	H.G.	S.X.
0.07	11.6	0.94	PtpAffx.158450.1.S1_at	DN487056	hypothetical protein	-	4e-33	At5g06130	chaperone protein dnaJ-related	O.I.	H.G.	S.X.
0.06	9.8	0.83	PtpAffx.126947.1.A1_at	CV278424	hypothetical protein	-	9e-8	At5g40380	protein kinase family protein	O.I.	H.G.	S.X.
0.06	9.8	0.82	PtpAffx.213817.1.S1_at	pmrna26967	white-brown-complex ABC transporter family	-	6e-2	At5g63000	unknown protein	O.I.	H.G.	S.X.
0.06	9.8	0.92	PtpAffx.200229.1.S1_x_at	pmrna433	hypothetical protein	-	3e-16	At1g27385	unknown protein	O.I.	H.G.	S.X.
0.04	6.9	0.87	Ptp.1863.2.S1_at	CK093716	hypothetical protein	-	1e-16	At4g25630	FIB2 (FIBRILLARIN 2)	O.I.	H.G.	S.X.
0.04	6.9	0.84	PtpAffx.95537.1.A1_at	CV242380	hypothetical protein	-	2e-12	At5g52180	unknown protein	O.I.	H.G.	S.X.
0.04	6.9	0.82	PtpAffx.9989.1.S1_at	CV267064	-	-	2e-1	At4g27900	-	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.3 93.7 GSM327660 Populus balsamifera_Male_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
3.2 93.5 GSM334224 Populus balsamifera_1006_mature_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.4 90.4 GSM327657 Populus balsamifera_Female_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.4 90.4 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
2.0 88.0 GSM327659 Populus balsamifera_Male_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.0 88.0 GSM327658 Populus balsamifera_Female_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
2.0 88.0 GSM327404 Populus balsamifera_1006_young_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
1.8 86.4 GSM327409 Populus balsamifera_1006_root_midday_3 GSE13990 Populus balsamifera developmental tissue series
1.7 85.5 GSM327405 Populus balsamifera_1006_young_leaf_midday_2 GSE13990 Populus balsamifera developmental tissue series
1.7 85.5 GSM327656 Populus balsamifera_Female_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
3.3	93.7	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.2	93.5	GSM334224	Populus balsamifera_1006_mature_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.0	88.0	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.0	88.0	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.0	88.0	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.8	86.4	GSM327409	Populus balsamifera_1006_root_midday_3	GSE13990	Populus balsamifera developmental tissue series
1.7	85.5	GSM327405	Populus balsamifera_1006_young_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
1.7	85.5	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

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Gene ID	PtpAffx.75910.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At5g20860: pectinesterase family protein (HF=1e-8)
Module size	46 genes
NF	0.10
%ile	21.1

Co-expression analysis

Gene ID PtpAffx.75910.1.A1_at Gene name Homology with ArabidopsisSimilar to At5g20860: pectinesterase family protein (HF=1e-8) Module size 46 genes NF 0.10 %ile 21.1

Co-expressed genes

Click More genes

Specific experiments for the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgareOryza_sativaTriticum_aestivumVitis_viniferaZea_mays

Gene ID PtpAffx.75910.1.A1_at

Gene name
Homology with Arabidopsis Similar to At5g20860: pectinesterase family protein (HF=1e-8)

Module size 46 genes

NF 0.10

%ile 21.1

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays