Co-expression analysis

Gene ID	PtpAffx.75787.1.A1_s_at
Gene name	AP2/ERF domain-containing transcription factor /// AP2/ERF domain-containing transcription factor
Homology with Arabidopsis	Similar to At3g07880: Rho GDP-dissociation inhibitor family protein (HF=3e-1)
Module size	6 genes
NF	0.19
%ile	35.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.59	84.9	0.89	PtpAffx.75787.1.A1_s_at	CV268367	AP2/ERF domain-containing transcription factor /// AP2/ERF domain-containing transcription factor	-	3e-1	At3g07880	Rho GDP-dissociation inhibitor family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	0.89	PtpAffx.4462.1.S1_at	CX185631	hypothetical protein	-	3e-9	At3g57260	BGL2 (BETA-1,3-GLUCANASE 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.27	47.1	0.90	PtpAffx.7639.1.A1_at	BP935195	hypothetical protein	-	3e+0	At3g25130	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.16	26.9	0.90	PtpAffx.203117.1.S1_at	pmrna6177	hypothetical protein	-	3e-90	At4g19040	EDR2	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.11	18.1	0.91	Ptp.4661.1.S1_s_at	CV256788	hypothetical protein	-	1e-19	At5g54500	FQR1 (FLAVODOXIN-LIKE QUINONE REDUCTASE 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.07	11.6	0.91	Ptp.1807.1.S1_at	CV229216	hypothetical protein	-	9e-25	At1g01710	acyl-CoA thioesterase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.4	95.9	GSM372090	Clone3200_LPI2_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
4.0	95.3	GSM372089	Clone3200_LPI2_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.2	93.5	GSM372092	Clone3200_LPI2_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.7	91.8	GSM327405	Populus balsamifera_1006_young_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.6	91.3	GSM327406	Populus balsamifera_1006_young_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM372091	Clone3200_LPI2_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.4	90.4	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM372099	Clone3200_LPI5_N+_8w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.0	88.0	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.0	88.0	GSM362884	Clone1979_LPI2_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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