Co-expression analysis

Gene ID	PtpAffx.7473.2.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At2g05803: unknown protein (HF=1e+0)
Module size	8 genes
NF	0.17
%ile	32.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.44	71.9	0.89	PtpAffx.7473.2.S1_at	CV237958	hypothetical protein	-	1e+0	At2g05803	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.38	63.7	0.89	PtpAffx.134623.1.A1_at	CV228876	-	-	2e+0	At5g39870	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.21	36.5	0.90	PtpAffx.215976.1.S1_at	pmrna30470	hypothetical protein	-	4e-25	At3g07330	ATCSLC6 (CELLULOSE-SYNTHASE LIKE C6)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.20	34.6	0.89	PtpAffx.140884.1.A1_s_at	CV241462	hypothetical protein	-	9e-4	At3g52990	pyruvate kinase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.20	34.6	0.88	PtpAffx.203574.1.S1_s_at	pmrna7102	hypothetical protein	-	2e-3	At1g67030	ZFP6 (ZINC FINGER PROTEIN 6)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.14	23.5	0.88	PtpAffx.212550.1.S1_at	pmrna24587	NAC domain protein, IPR003441	-	2e+0	At5g62850	AtVEX1 (VEGETATIVE CELL EXPRESSED1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.11	18.1	0.90	PtpAffx.217331.1.S1_at	pmrna32547	hypothetical protein	-	1e+0	At1g05290	transcription factor	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.09	14.6	0.88	PtpAffx.202924.1.S1_at	pmrna5786	hypothetical protein	-	2e+0	At3g10880	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.9	92.5	GSM362887	Clone1979_LPI5_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.2	89.3	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM362889	Clone1979_LPI5_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.0	88.0	GSM372094	Clone3200_LPI5_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.9	87.2	GSM327402	Populus balsamifera_20071015_Etiolated_seedling_6d_2	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM327400	Populus balsamifera_20071015_Etiolated_seedling_6d_1	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM372090	Clone3200_LPI2_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.9	87.2	GSM372042	Clone1979_LPI5_N-_8w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.8	86.4	GSM327403	Populus balsamifera_20071015_Etiolated_seedling_6d_3	GSE13990	Populus balsamifera developmental tissue series
1.7	85.5	GSM334224	Populus balsamifera_1006_mature_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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