Co-expression analysis

Gene ID	PtpAffx.74614.3.S1_at
Gene name
Homology with Arabidopsis	Similar to At5g20520: WAV2 (WAVY GROWTH 2) (HF=2e-64)
Module size	6 genes
NF	0.06
%ile	12.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	92.6	0.93	PtpAffx.74614.3.S1_at	CV270110	-	-	2e-64	At5g20520	WAV2 (WAVY GROWTH 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.16	26.9	0.94	PtpAffx.28706.1.S1_at	CK317869	hypothetical protein	-	1e-70	At1g17280	UBC34 (ubiquitin-conjugating enzyme 34)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.13	21.6	0.95	PtpAffx.65137.1.S1_at	DN493780	-	-	5e-3	At3g15920	phox (PX) domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.11	18.1	0.94	PtpAffx.77326.1.S1_at	DN493440	hypothetical protein	-	8e+0	At3g54120	reticulon family protein (RTNLB12)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.04	6.9	0.94	PtpAffx.21910.1.S1_at	CV259421	hypothetical protein	-	2e-18	At5g22350	ELM1 (ELONGATED MITOCHONDRIA 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.02	3.6	0.94	PtpAffx.38230.1.S1_at	CN523327	-	-	1e-88	At3g13772	endomembrane protein 70, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.3	95.8	GSM327400	Populus balsamifera_20071015_Etiolated_seedling_6d_1	GSE13990	Populus balsamifera developmental tissue series
4.0	95.3	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.1	93.2	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.9	92.5	GSM372092	Clone3200_LPI2_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.3	89.8	GSM327359	Populus balsamifera_20071015_Seedling_continuous_light_6d_3	GSE13990	Populus balsamifera developmental tissue series
2.0	88.0	GSM327380	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_1	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM327358	Populus balsamifera_20071015_Seedling_continuous_light_6d_2	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM244431	non infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
1.8	86.4	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.8	86.4	GSM362883	Clone1979_LPI2_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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