Co-expression analysis

Gene ID	PtpAffx.7456.1.S1_at
Gene name	2-dehydro-3-deoxyphosphoheptonate aldolase/ 3-deoxy-d-arabino-heptulosonate 7-phosphate synthetase
Homology with Arabidopsis	Similar to At1g22410: 2-dehydro-3-deoxyphosphoheptonate aldolase, putative / 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase, putative / DAHP synthetase, putative (HF=2e-79)
Module size	9 genes
NF	0.47
%ile	77.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.55	82.2	0.89	PtpAffx.7456.1.S1_at	CK318652	2-dehydro-3-deoxyphosphoheptonate aldolase/ 3-deoxy-d-arabino-heptulosonate 7-phosphate synthetase	-	2e-79	At1g22410	2-dehydro-3-deoxyphosphoheptonate aldolase, putative / 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase, putative / DAHP synthetase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	0.92	PtpAffx.40192.3.S1_at	BU871164	-	-	5e+0	At2g45050	zinc finger (GATA type) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.59	84.9	0.92	Ptp.313.2.S1_s_at	CB833390	hypothetical protein	-	8e-11	At1g72190	oxidoreductase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.56	83.9	0.92	PtpAffx.221766.1.S1_at	pmrna38815	hypothetical protein	-	2e-32	At4g31120	SKB1 (SHK1 BINDING PROTEIN 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.48	75.4	0.92	PtpAffx.214284.1.S1_at	pmrna27785	hypothetical protein	-	2e-175	At4g31590	ATCSLC5 (CELLULOSE-SYNTHASE LIKE C5)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.42	68.6	0.92	PtpAffx.63160.1.A1_s_at	CV252057	hypothetical protein	-	5e-3	At5g60830	AtbZIP70 (Arabidopsis thaliana basic leucine-zipper 70)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.41	67.7	0.91	PtpAffx.224746.1.S1_s_at	pmrna43569	hypothetical protein	-	1e-5	At1g09850	XBCP3 (xylem bark cysteine peptidase 3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	0.94	PtpAffx.4290.1.S1_a_at	CV258163	chorismate synthase /// chorismate synthase	-	6e-76	At1g48850	EMB1144 (embryo defective 1144)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.25	43.6	0.91	PtpAffx.214836.1.S1_at	pmrna28727	hypothetical protein	-	7e-1	At4g21760	BGLU47 (Beta-glucosidase 47)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.6	94.5	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.2	93.5	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.1	93.2	GSM328105	Populus x canescens leaf hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.6	91.3	GSM327409	Populus balsamifera_1006_root_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM327402	Populus balsamifera_20071015_Etiolated_seedling_6d_2	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM328066	Populus x canescens leaf control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.0	88.0	GSM327407	Populus balsamifera_1006_root_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.5	83.5	GSM362886	Clone1979_LPI2_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.5	83.5	GSM334226	Populus balsamifera_1006_mature_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series
1.5	83.5	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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