Co-expression analysis

Gene ID PtpAffx.74227.1.A1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At2g04420: nucleic acid binding (HF=2e+0)
Module size 9 genes
NF 0.17
%ile 33.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5582.20.89PtpAffx.74227.1.A1_atCV274267hypothetical protein-2e+0At2g04420nucleic acid bindingO.I.H.G.S.X.
0.4067.00.90PtpAffx.50821.1.A1_atCV231185--3e+0At4g17730SYP23 (SYNTAXIN OF PLANTS 23)O.I.H.G.S.X.
0.3661.60.90PtpAffx.6509.1.S1_atCN549620hypothetical protein-1e-2At2g12400unknown proteinO.I.H.G.S.X.
0.3357.50.92PtpAffx.210472.1.S1_atpmrna20557hypothetical protein-3e-22At3g02250unknown proteinO.I.H.G.S.X.
0.2747.10.92PtpAffx.39381.1.A1_atCV260270hypothetical protein-4e+0At4g30660hydrophobic protein, putative / low temperature and salt responsive protein, putativeO.I.H.G.S.X.
0.2543.60.91PtpAffx.101360.1.A1_atCV267798hypothetical protein-2e+0At3g53210nodulin MtN21 family proteinO.I.H.G.S.X.
0.1729.10.92PtpAffx.6053.1.S1_atCN520953--9e-21At5g07830AtGUS2 (Arabidopsis thaliana glucuronidase 2)O.I.H.G.S.X.
0.0914.60.89PtpAffx.76713.1.S1_s_atCV243996hypothetical protein-3e-8At2g14835zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.0711.60.90PtpAffx.10365.2.S1_atDN485109hypothetical protein-2e-9At2g33470GLTP1 (glycolipid transfer protein 1)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
2.892.1GSM136938Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucroseGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
2.590.9GSM327408Populus balsamifera_1006_root_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.590.9GSM327407Populus balsamifera_1006_root_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.590.9GSM334226Populus balsamifera_1006_mature_leaf_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.590.9GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.289.3GSM136936Poplar in 1 x hrp + 0.25 % sucrose no bacteriaGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
1.886.4GSM362888Clone1979_LPI5_N+_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
1.886.4GSM328281Populus x canescens root control_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.785.5GSM327281Populus balsamifera_20071015_Seedling_continuous_light_6d_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.684.5GSM372092Clone3200_LPI2_N-_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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