Co-expression analysis

Gene ID PtpAffx.73922.1.S1_s_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At2g30800: HVT1 (HELICASE IN VASCULAR TISSUE AND TAPETUM) (HF=2e-11)
Module size 6 genes
NF 0.47
%ile 76.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5984.90.96PtpAffx.73922.1.S1_s_atDN501167hypothetical protein-2e-11At2g30800HVT1 (HELICASE IN VASCULAR TISSUE AND TAPETUM)O.I.H.G.S.X.
0.5582.20.97PtpAffx.223619.1.S1_atpmrna41689hypothetical protein-2e-136At3g26560ATP-dependent RNA helicase, putativeO.I.H.G.S.X.
0.5078.60.97PtpAffx.201126.1.S1_atpmrna2215--3e-30At5g64270splicing factor, putativeO.I.H.G.S.X.
0.4673.70.97PtpAffx.215528.1.S1_s_atpmrna29780hypothetical protein-3e-52At1g28420HB-1 (homeobox-1)O.I.H.G.S.X.
0.3357.50.97PtpAffx.88869.1.A1_atCV248897hypothetical protein-2e-86At5g53480importin beta-2, putativeO.I.H.G.S.X.
0.3052.00.97PtpAffx.101651.1.S1_atCV256378hypothetical protein-3e-37At1g34220unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.196.8GSM327656Populus balsamifera_Female_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
4.295.6GSM327657Populus balsamifera_Female_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.293.5GSM372094Clone3200_LPI5_N+_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
3.293.5GSM327658Populus balsamifera_Female_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.791.8GSM327408Populus balsamifera_1006_root_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.590.9GSM328558Populus x canescens root control_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.590.9GSM328292Populus x canescens root control_rep_05GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.490.4GSM327659Populus balsamifera_Male_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.188.6GSM362888Clone1979_LPI5_N+_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.188.6GSM328277Populus x canescens root control_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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